Browse Element(s) Details


OsAffx.11177.1.S1_at

Description tigr:9629.m02293
TID=OsAffx.11177.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SRF-type transcription factor (DNA-binding and dimerisation domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2377011/11SRF-type transcription factor family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23710Os.17912.2.S1_x_at11/111+13325360..13328373expressed protein
LOC_Os01g23710OsAffx.20377.1.S1_x_at6/111+13325360..13328373expressed protein
LOC_Os01g23710Os.46681.1.S1_at1/111+13325360..13328373expressed protein
LOC_Os01g23730OsAffx.23357.1.S1_at11/111+13331049..13331852retrotransposon protein, putative, unclassified
LOC_Os01g23740Os.17269.1.S1_at11/111+13336110..13339991protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os01g23750OsAffx.2068.1.S1_at11/111+13342598..13343818hypothetical protein
LOC_Os01g23760OsAffx.23358.1.S1_at11/111+13346188..13347411SRF-type transcription factor family protein
LOC_Os01g23770OsAffx.11177.1.S1_at11/111+13348897..13350191SRF-type transcription factor family protein
LOC_Os01g23780OsAffx.11178.1.S1_x_at11/111+13356101..13357146expressed protein
LOC_Os01g23780OsAffx.11178.1.S1_at11/111+13356101..13357146expressed protein
LOC_Os01g23790OsAffx.23359.1.S1_at11/111+13357323..13357904hypothetical protein
LOC_Os01g23800OsAffx.2069.1.S1_at11/111+13372480..13374717hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11177.1.S1_at--489--9231Chr01:13349442..13349466 (25 bp)
TCCATGGCGGCCAATACATCGGCAG
LOC_Os01g23770
OsAffx.11177.1.S1_at--1059--4671Chr01:13349484..13349508 (25 bp)
GCGGTGACATCCAGATGCAGACGAC
LOC_Os01g23770
OsAffx.11177.1.S1_at--211--4651Chr01:13349878..13349902 (25 bp)
GCGTCAGCGACTACTCGGTGCAGAG
LOC_Os01g23770
OsAffx.11177.1.S1_at--298--9911Chr01:13349889..13349913 (25 bp)
TACTCGGTGCAGAGCTCGGGCTACG
LOC_Os01g23770
OsAffx.11177.1.S1_at--1070--3911Chr01:13349905..13349929 (25 bp)
CGGGCTACGGGATCGGAAACCAGAT
LOC_Os01g23770
OsAffx.11177.1.S1_at--417--1491Chr01:13349941..13349965 (25 bp)
AGCAACTCCTCTATCAGATGCAAAT
LOC_Os01g23770
OsAffx.11177.1.S1_at--137--6331Chr01:13349957..13349981 (25 bp)
GATGCAAATGCAATACCCAGTCGGT
LOC_Os01g23770
OsAffx.11177.1.S1_at--515--2451Chr01:13350006..13350030 (25 bp)
AACACGCAGACGCAGTCCCCGGATT
LOC_Os01g23770
OsAffx.11177.1.S1_at--1029--191Chr01:13350028..13350052 (25 bp)
ATTTGCGGAGCTTCAGCAACGTCGT
LOC_Os01g23770
OsAffx.11177.1.S1_at--201--7191Chr01:13350051..13350075 (25 bp)
GTCGGCGACTACTCGTACACGGCGG
LOC_Os01g23770
OsAffx.11177.1.S1_at--241--9391Chr01:13350097..13350121 (25 bp)
TCGATCAGATGCATCACCCAGTCGG
LOC_Os01g23770
Target Sequence 
TCCATGGCGGCCAATACATCGGCAGCAGCAGCGGCGGCGGGGGCGGTGACATCCAGATGCAGACGACGCCGGCCGCAGAT
GGCATCAGCTTCGCCGAGCACTTTCTCGTCGCGCCGCGCGCTCAGCCCCTCGCCTTCAGCACCGCCGGCGCCGACTTCAT
CAACGCACCGAACAACTTCCTCACCACGGGCGTCAGCGTCAGCGACTACTCGGTGCAGAGCTCGGGCTACGGGATCGGAA
ACCAGATCGACAACGCCAAGCAACTCCTCTATCAGATGCAAATGCAATACCCAGTCGGTGGCACGGGTGGCGCCGAGCCC
AGCAACACGCAGACGCAGTCCCCGGATTTGCGGAGCTTCAGCAACGTCGTCGGCGACTACTCGTACACGGCGGCGCAGAG
CTCGGCCAACCGCCTCGATCAGATGCATCACCCAGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis