Browse Element(s) Details


OsAffx.11231.1.S1_at

Description tigr:9629.m02656
TID=OsAffx.11231.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 3-dehydroquinate dehydratase (EC 4.2.1.10) shikimate 5-dehydrogenase (EC 1.1.1.25) precursor - garden pea (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2777011/11dehydroquinate dehydratase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27740Os.22658.1.S1_at11/111+15801150..15805188DnaJ domain containing protein, expressed
LOC_Os01g27750Os.7136.1.S1_at11/111+15806834..15820413Type I 3-dehydroquinase family protein, expressed
LOC_Os01g27750Os.7136.2.S1_x_at11/111+15806834..15820413Type I 3-dehydroquinase family protein, expressed
LOC_Os01g27760OsAffx.23423.1.S1_at11/111+15821755..15823146hypothetical protein
LOC_Os01g27770OsAffx.11231.1.S1_at11/111+15829852..15832481dehydroquinate dehydratase, putative
LOC_Os01g27780Os.7136.2.S1_x_at1/111+15835107..15838538Shikimate/quinate 5-dehydrogenase family protein, expressed
LOC_Os01g27790OsAffx.10711.1.S1_x_at3/111+15841920..15850258retrotransposon protein, putative, unclassified
LOC_Os01g27790OsAffx.10711.1.S1_at1/111+15841920..15850258retrotransposon protein, putative, unclassified
LOC_Os01g27790Os.27544.1.A1_at1/111+15841920..15850258retrotransposon protein, putative, unclassified
LOC_Os01g27800Os.28943.1.S1_x_at4/111+15850930..15854472retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11231.1.S1_at--1057--5131Chr01:15831546..15831570 (25 bp)
GCAAACTTATTGTCTCGGCACATAA
LOC_Os01g27770
OsAffx.11231.1.S1_at--849--811Chr01:15831701..15832164 (25 bp)
ATGGTGCACTGCCAAACCGTGCAAA
LOC_Os01g27770
OsAffx.11231.1.S1_at--102--2452Chr03:16312457..16312631 (25 bp)
AAAATAGACCGTCGGCTCAACGCCA
NONE
OsAffx.11231.1.S1_at--737--4451Chr01:15832204..15832228 (25 bp)
GCCTTTGCGCTGAGGTTACACTGAT
LOC_Os01g27770
OsAffx.11231.1.S1_at--683--10691Chr01:15832243..15832267 (25 bp)
TTGCCAATGTGGCAGCCGAGCCAAT
LOC_Os01g27770
OsAffx.11231.1.S1_at--112--10851Chr01:15832306..15832330 (25 bp)
TTGGCGCTAAGCTACTAATCTCAGT
LOC_Os01g27770
OsAffx.11231.1.S1_at--896--452Chr01:15832323..15832347 (25 bp)
ATCTCAGTGCCAATTTCTGGTGCTG
LOC_Os01g27770
OsAffx.11231.1.S1_at--189--1571Chr01:15832348..15832372 (25 bp)
AGCTTTGGGACTTAGCTGCTCGCAG
LOC_Os01g27770
OsAffx.11231.1.S1_at--269--2211Chr01:15832387..15832411 (25 bp)
ACAACTCATATGTTGGGCGGCCCAG
LOC_Os01g27770
OsAffx.11231.1.S1_at--1025--3411Chr01:15832409..15832433 (25 bp)
CAGAGGCGCTGAGCCGTCAAATCTC
LOC_Os01g27770
OsAffx.11231.1.S1_at--898--7071Chr01:15832424..15832448 (25 bp)
GTCAAATCTCAGTGCCAACGTAATT
LOC_Os01g27770
Target Sequence 
GCAAACTTATTGTCTCGGCACATAATTATGAAAGTACTCCATCCTGTGAGGAGCTTGCAGATCTTGTGGCTAGAATACAA
GCAGTTGGAGCTGATATAGTGAAAATCGCAACAACAGCTAATGACATTGTTGATGTGTCACAGATGTTCCAAGTGATGGT
GCACTGCCAAACCGTGCAAAAAAACTTACCAAAAATAGACCGTCGGCTCAACGCCAACCGCCTTTGCGCTGAGGTTACAC
TGATCAGCGCCGACTCCCTTGCCAATGTGGCAGCCGAGCCAATCCCCTCGTCTACATGGCAGGGGCTCAACACCAACCGC
ATTGGCGCTAAGCTACTAATCTCAGTGCCAATTTCTGGTGCTGAGCTTTGGGACTTAGCTGCTCGCAGTTGGGCCACCCA
ACACAACTCATATGTTGGGCGGCCCAGAGGCGCTGAGCCGTCAAATCTCAGTGCCAACGTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11231.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis