Browse Element(s) Details


OsAffx.11293.1.S1_at

Description tigr:9629.m03101
TID=OsAffx.11293.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=polyprotein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3312010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33100OsAffx.19542.3.S1_x_at7/111+18537707..18541929retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g33110Os.49812.1.S1_at11/111+18556167..18559937Protein kinase domain containing protein, expressed
LOC_Os01g33120OsAffx.11293.1.S1_at10/111+18560932..18563852hypothetical protein
LOC_Os01g33130OsAffx.23483.2.S1_at10/111+18564259..18565286hypothetical protein
LOC_Os01g33130OsAffx.23483.1.S1_x_at5/111+18564259..18565286hypothetical protein
LOC_Os01g33136OsAffx.3613.1.S1_x_at3/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33136OsAffx.27522.1.S1_x_at2/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33136OsAffx.278.1.S1_at1/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33136OsAffx.3613.1.S1_at1/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33136Os.27101.1.S1_at1/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33142Os.31929.3.S1_x_at2/111+18573558..18576955hypothetical protein
LOC_Os01g33142Os.23706.1.A1_x_at1/111+18573558..18576955hypothetical protein
LOC_Os01g33150NANA1+18580831..18582406retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33160NANA1+18586411..18589398hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11293.1.S1_at--1002--7591Chr01:18563194..18563218 (25 bp)
GGGAAGGGCCGTTTGACATTATCAA
LOC_Os01g33120
OsAffx.11293.1.S1_at--225--9412Chr04:9626203..9626223 (21 bp)
TCGTCACACGGAGCAATCACATTTC
NONE
OsAffx.11293.1.S1_at--234--10291NONE
TTTCGTAACAACTCAGACCAAGGCA
NONE
OsAffx.11293.1.S1_at--1138--7991Chr01:18562268..18562292 (25 bp)
GGATGTGGTATTCCACCAGTACCAA
LOC_Os01g33120
OsAffx.11293.1.S1_at--1093--3351Chr01:18562157..18562181 (25 bp)
CACCGGTCCTTAACAACTCATGAGA
LOC_Os01g33120
OsAffx.11293.1.S1_at--21--10051Chr01:18562120..18562144 (25 bp)
TAGAGTCGGTTGATTCCTCACCTTA
LOC_Os01g33120
OsAffx.11293.1.S1_at--3--2911Chr01:18562094..18562118 (25 bp)
AAGGTTAGGCGTCAATTGTCTCCAC
LOC_Os01g33120
OsAffx.11293.1.S1_at--496--3251Chr01:18562022..18562046 (25 bp)
CAACCCTCCATATCGAAACTTGCAA
LOC_Os01g33120
OsAffx.11293.1.S1_at--1154--5911Chr01:18561965..18561989 (25 bp)
GAGCTTCGAACCCACGATGCGGAAT
LOC_Os01g33120
OsAffx.11293.1.S1_at--317--71Chr01:18561929..18561953 (25 bp)
ATTGCTAATCTTGGGCACGAATTTG
LOC_Os01g33120
OsAffx.11293.1.S1_at--27--3131Chr01:18561910..18561934 (25 bp)
AATTTGATGTGCTTAGGCTCCGTTC
LOC_Os01g33120
Target Sequence 
GGGAAGGGCCGTTTGACATTATCAACACCTCGTCACACGGAGCAATCACATTTCGTAACAACTCAGACCAAGGCAAGGGA
TGTGGTATTCCACCAGTACCAAGCCCCCATCCCACTCCGGTGACAACGCAAAAGAGGTTCCGCGTTTTTGGTGTGCGAAC
CCCCGGTGGTGGCTATGGGAAGGGGCTACACCGGTCCTTAACAACTCATGAGAAGGAAGAGGTGGTAGAGTCGGTTGATT
CCTCACCTTACAAGGTTAGGCGTCAATTGTCTCCACCTCCCATTAGGAGGGAGGCCGGGAAATTTGAGGGGAGTGACTCT
CCCCAACCCTCCATATCGAAACTTGCAAAGAAGATCAAGAAACTCCGCAAAGAGAACAAGGAGCTTCGAACCCACGATGC
GGAATGTAGGGAAGAAATTGCTAATCTTGGGCACGAATTTGATGTGCTTAGGCTCCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis