Browse Element(s) Details


OsAffx.11302.2.S1_at

Description tigr:9629.m03142
TID=OsAffx.11302.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3353011/11hypothetical protein
LOC_Os06g137001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33470OsAffx.5954.4.S1_x_at2/111+18758807..18760302hypothetical protein
LOC_Os01g33480OsAffx.23491.1.S1_at11/111+18762557..18762961hypothetical protein
LOC_Os01g33490Os.53265.1.S1_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33490OsAffx.8942.1.S1_x_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33500NANA1+18768366..18768572hypothetical protein
LOC_Os01g33510OsAffx.2139.2.S1_at11/111+18771261..18771817hypothetical protein
LOC_Os01g33514Os.8289.1.A1_at11/111+18773839..18775776expressed protein
LOC_Os01g33520OsAffx.21182.2.S1_x_at11/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.1.S1_at11/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.2.S1_at10/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.3.S1_x_at2/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33530OsAffx.11302.2.S1_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.2.S1_s_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.1.S1_at1/111+18782769..18785003hypothetical protein
LOC_Os01g33540Os.25513.1.S1_at11/111+18786069..18789030transposon protein, putative, unclassified, expressed
LOC_Os01g33550OsAffx.23492.1.S1_at11/111+18791153..18791679hypothetical protein
LOC_Os01g33560NANA1+18798783..18799568hypothetical protein
LOC_Os01g33569OsAffx.10792.1.S1_at1/111+18802187..18802483NA
LOC_Os01g33580OsAffx.11392.1.S1_at11/111+18808964..18810421hypothetical protein
LOC_Os01g33580OsAffx.11392.4.S1_s_at11/111+18808964..18810421hypothetical protein
LOC_Os01g33580OsAffx.11392.2.S1_x_at3/111+18808964..18810421hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11302.2.S1_at--178--10471Chr01:18784239..18784346 (25 bp)
TTACGCCATGATATGGTCTTCCTTC
LOC_Os01g33530
OsAffx.11302.2.S1_at--861--9951Chr01:18784240..18784347 (25 bp)
TACGCCATGATATGGTCTTCCTTCC
LOC_Os01g33530
OsAffx.11302.2.S1_at--12--4171Chr01:18784242..18784349 (25 bp)
CGCCATGATATGGTCTTCCTTCCAA
LOC_Os01g33530
OsAffx.11302.2.S1_at--447--10111Chr01:18784336..18784357 (22 bp)
TATGGTCTTCCTTCCAATATGTACT
LOC_Os01g33530
OsAffx.11302.2.S1_at--988--811Chr01:18784336..18784358 (23 bp)
ATGGTCTTCCTTCCAATATGTACTT
LOC_Os01g33530
OsAffx.11302.2.S1_at--706--7811Chr01:18784336..18784360 (25 bp)
GGTCTTCCTTCCAATATGTACTTCA
LOC_Os01g33530
OsAffx.11302.2.S1_at--206--7151Chr01:18784337..18784361 (25 bp)
GTCTTCCTTCCAATATGTACTTCAT
LOC_Os01g33530
OsAffx.11302.2.S1_at--982--9571Chr01:18784338..18784362 (25 bp)
TCTTCCTTCCAATATGTACTTCATT
LOC_Os01g33530
OsAffx.11302.2.S1_at--562--7011Chr01:18784353..18784557 (25 bp)
GTACTTCATTAAAGCAACTGTTGCA
LOC_Os01g33530
OsAffx.11302.2.S1_at--402--10371Chr01:18784472..18784917 (25 bp)
TTTTTTCAGGAAGACATCGATGAAT
LOC_Os01g33530
OsAffx.11302.2.S1_at--168--5652Chr01:18784905..18784929 (25 bp)
GACATCGATGAATACAGAAGAAAGA
LOC_Os01g33530
Target Sequence 
TTACGCCATGATATGGTCTTCCTTCCAATATGTACTTCATTAAAGCAACTGTTGCAAGGAGTAGAAAAATGCATCAAGCT
TGCCATGGATTCTGATGTTCATTATCCTACGTGGACTGATTTCAATGTCACAAATTGGGATATAAGCATACGATACTTGG
CCAGGAAGAAGGATAGGACCTCAAGTGGACTATTCATAATAAAGTTCATCGAGTACTGGAATGGGGTGTGTCTGACTAAA
ACTTTTTTTCAGGAAGACATCGATGAATACAGAAGAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11302.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis