Browse Element(s) Details


OsAffx.11334.1.S1_at

Description tigr:9629.m03321
TID=OsAffx.11334.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=rp3 protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3530011/11Rp3 protein, putative
LOC_Os01g352541/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35254OsAffx.23519.1.S1_at11/111+19843603..19849337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35254Os.14491.2.S1_x_at5/111+19843603..19849337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35254Os.47463.1.S1_x_at4/111+19843603..19849337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35254OsAffx.11334.1.S1_at1/111+19843603..19849337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35270NANA1+19853690..19855895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35280NANA1+19857412..19860744transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35290OsAffx.30226.2.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35290OsAffx.442.1.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35290Os.46785.2.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35300OsAffx.11334.1.S1_at11/111+19866217..19867136Rp3 protein, putative
LOC_Os01g35310OsAffx.11335.1.S1_at11/111+19869284..19871103hypothetical protein
LOC_Os01g35310OsAffx.1158.1.S1_at1/111+19869284..19871103hypothetical protein
LOC_Os01g35320NANA1+19874147..19874975hypothetical protein
LOC_Os01g35330Os.46604.1.S1_s_at11/111+19876035..19876948expressed protein
LOC_Os01g35330Os.46431.1.S1_at10/111+19876035..19876948expressed protein
LOC_Os01g35340OsAffx.21272.1.S1_x_at11/111+19878442..19878675hypothetical protein
LOC_Os01g35360NANA1+19887181..19888530retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11334.1.S1_at--968--851Chr01:19866774..19866798 (25 bp)
ATGGCAGGTGTGAGCAACGATCTTC
LOC_Os01g35300
OsAffx.11334.1.S1_at--31--5151Chr01:19866761..19866785 (25 bp)
GCAACGATCTTCAGGAACTCCAGGA
LOC_Os01g35300
OsAffx.11334.1.S1_at--146--8931Chr01:19866679..19866703 (25 bp)
TGACCGGTCGTCTAATTGGCTCAAA
LOC_Os01g35300
OsAffx.11334.1.S1_at--395--5571Chr01:19866649..19866673 (25 bp)
GAAAGACGCTGCTTACGATGCTGAA
LOC_Os01g35300
OsAffx.11334.1.S1_at--887--9231Chr01:19866617..19866641 (25 bp)
TCCATGAGTTCCGTATTGAGGCTGA
LOC_Os01g35300
OsAffx.11334.1.S1_at--1098--6771Chr01:19866558..19866582 (25 bp)
GTTATCGTCAAACACTTCTGGACAA
LOC_Os01g35300
OsAffx.11334.1.S1_at--400--4351Chr01:19866531..19866555 (25 bp)
CCAAAATCAGTTGTCTTCGAATTCA
LOC_Os01g35300
OsAffx.11334.1.S1_at--516--3091Chr01:19866426..19866450 (25 bp)
AATAGTATACCCGTGGATCGTCCTG
LOC_Os01g35300
OsAffx.11334.1.S1_at--1117--6391Chr01:19866411..19866435 (25 bp)
GATCGTCCTGCTCAGCATGTAAGCA
LOC_Os01g35300
OsAffx.11334.1.S1_at--1002--4158Chr08:23355520..23355544 (25 bp)
CGCCGACCGGCAATAATCACTATAG
NONE
OsAffx.11334.1.S1_at--962--372Chr04:6657654..6657677 (24 bp)
ATCACAATGGGAATGTCACCCCTTT
NONE
Target Sequence 
ATGGCAGGTGTGAGCAACGATCTTCAGGAACTCCAGGATCTAGTTGAGGAGATCAACAATTGGTTACAAACAGTGGGTGA
TAAAGCTATGAGGAATGACCGGTCGTCTAATTGGCTCAAAAAACTGAAAGACGCTGCTTACGATGCTGAAGATTTGGTCC
ATGAGTTCCGTATTGAGGCTGAGAAACATGAAGAAAATATTGTTAGTGTCAAGAATGTTATCGTCAAACACTTCTGGACA
AAACCAAAATCAGTTGTCTTCGAATTCAAGACAGCTCACAAAATCAAGGCAATAAAGAAGAGATTTGATGCAATTGTAAA
GGGAAGAAGTTACTACAGCACAATAGCAAATAGTATACCCGTGGATCGTCCTGCTCAGCATGTAAGCAAGACAATTGGGG
ATGTTATGAAAATAGATGCACAACGGAGACACGAATTTTACGTGGAAAACCCTTGCGGGAAAAAACCACGGGCGCCGACC
GGCAATAATCACTATAGAGGAGATGATTACAAACGTAGGGGAATCACAATGGGAATGTCACCCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis