Browse Element(s) Details


OsAffx.23519.1.S1_at

Description tigr:9629.m03316
TID=OsAffx.23519.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3525411/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35210OsAffx.10637.3.S1_s_at11/111+19816033..19819719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210OsAffx.10637.1.S1_s_at11/111+19816033..19819719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210OsAffx.10637.4.S1_s_at8/111+19816033..19819719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35220Os.35344.3.S1_x_at10/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.22940.3.S1_x_at9/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.22940.2.S1_s_at8/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220Os.35344.18.S1_x_at8/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.22940.5.S1_x_at6/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.22940.5.S1_at5/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.22940.1.S1_s_at4/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.22940.2.S1_at4/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.31552.2.S1_at1/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35230Os.41016.1.S1_at11/111+19832380..19835214oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g35240OsAffx.23518.1.S1_at11/111+19836827..19838637hypothetical protein
LOC_Os01g35240OsAffx.23518.1.S1_s_at9/111+19836827..19838637hypothetical protein
LOC_Os01g35240Os.29072.1.S1_at4/111+19836827..19838637hypothetical protein
LOC_Os01g35254OsAffx.23519.1.S1_at11/111+19843603..19849337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35254Os.14491.2.S1_x_at5/111+19843603..19849337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35254Os.47463.1.S1_x_at4/111+19843603..19849337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35254OsAffx.11334.1.S1_at1/111+19843603..19849337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35270NANA1+19853690..19855895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35280NANA1+19857412..19860744transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35290OsAffx.30226.2.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35290OsAffx.442.1.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35290Os.46785.2.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35300OsAffx.11334.1.S1_at11/111+19866217..19867136Rp3 protein, putative
LOC_Os01g35310OsAffx.11335.1.S1_at11/111+19869284..19871103hypothetical protein
LOC_Os01g35310OsAffx.1158.1.S1_at1/111+19869284..19871103hypothetical protein
LOC_Os01g35320NANA1+19874147..19874975hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23519.1.S1_at--40--7711Chr01:19844147..19844171 (25 bp)
GGGTCCTTAGTTTTGTGTACTGCAC
LOC_Os01g35254
OsAffx.23519.1.S1_at--101--9091Chr01:19844108..19844132 (25 bp)
TGCTACCGTCAGAACCATATGGGAA
LOC_Os01g35254
OsAffx.23519.1.S1_at--380--8191Chr01:19844087..19844111 (25 bp)
GGAAGCTTCGCAACTTACAGACCAT
LOC_Os01g35254
OsAffx.23519.1.S1_at--55--5851Chr01:19844068..19844092 (25 bp)
GACCATCACTTTAACATTTTGTACG
LOC_Os01g35254
OsAffx.23519.1.S1_at--743--6991Chr01:19844048..19844072 (25 bp)
GTACGGCTTTTAAACACCTGCCACA
LOC_Os01g35254
OsAffx.23519.1.S1_at--185--1391Chr01:19843990..19844014 (25 bp)
AGACCTTTCATGTTGTACTGAGCTT
LOC_Os01g35254
OsAffx.23519.1.S1_at--1066--9911Chr01:19843975..19843999 (25 bp)
TACTGAGCTTAGAGAATTGCCTGAA
LOC_Os01g35254
OsAffx.23519.1.S1_at--225--4951Chr01:19843949..19843973 (25 bp)
GCATAGGCGCCTTGAAAAAGCTTGA
LOC_Os01g35254
OsAffx.23519.1.S1_at--235--3491Chr01:19843903..19843927 (25 bp)
CAGGAGATTGTGTGGCCTGCCAGCA
LOC_Os01g35254
OsAffx.23519.1.S1_at--1071--7911Chr01:19843878..19843902 (25 bp)
GGTTGTGGGCAACTGATTCGTTTAC
LOC_Os01g35254
OsAffx.23519.1.S1_at--545--11Chr01:19843863..19843887 (25 bp)
ATTCGTTTACAGCAGTTGGGCTTGT
LOC_Os01g35254
Target Sequence 
GGGTCCTTAGTTTTGTGTACTGCACGGATTTGCAGCAACTGCTACCGTCAGAACCATATGGGAAGCTTCGCAACTTACAG
ACCATCACTTTAACATTTTGTACGGCTTTTAAACACCTGCCACAGTGCATCACTTTATTGGGTCATCTACAATATGTAGA
CCTTTCATGTTGTACTGAGCTTAGAGAATTGCCTGAAGGCATAGGCGCCTTGAAAAAGCTTGAAGTTTTGAATCTAGAGA
GATGCAGGAGATTGTGTGGCCTGCCAGCAGGTTGTGGGCAACTGATTCGTTTACAGCAGTTGGGCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis