Browse Element(s) Details


OsAffx.23518.1.S1_at

Description tigr:9629.m03315
TID=OsAffx.23518.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3524011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35200OsAffx.32056.1.S1_at11/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200OsAffx.32056.1.S1_x_at11/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200OsAffx.30536.1.S1_x_at1/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200OsAffx.8676.1.S1_at1/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210OsAffx.10637.3.S1_s_at11/111+19816033..19819719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210OsAffx.10637.1.S1_s_at11/111+19816033..19819719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210OsAffx.10637.4.S1_s_at8/111+19816033..19819719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35220Os.35344.3.S1_x_at10/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.22940.3.S1_x_at9/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.22940.2.S1_s_at8/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220Os.35344.18.S1_x_at8/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.22940.5.S1_x_at6/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.22940.5.S1_at5/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.22940.1.S1_s_at4/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.22940.2.S1_at4/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.31552.2.S1_at1/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35230Os.41016.1.S1_at11/111+19832380..19835214oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g35240OsAffx.23518.1.S1_at11/111+19836827..19838637hypothetical protein
LOC_Os01g35240OsAffx.23518.1.S1_s_at9/111+19836827..19838637hypothetical protein
LOC_Os01g35240Os.29072.1.S1_at4/111+19836827..19838637hypothetical protein
LOC_Os01g35254OsAffx.23519.1.S1_at11/111+19843603..19849337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35254Os.14491.2.S1_x_at5/111+19843603..19849337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35254Os.47463.1.S1_x_at4/111+19843603..19849337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35254OsAffx.11334.1.S1_at1/111+19843603..19849337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35270NANA1+19853690..19855895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35280NANA1+19857412..19860744transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35290OsAffx.30226.2.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35290OsAffx.442.1.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35290Os.46785.2.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23518.1.S1_at--1134--1731Chr01:19836857..19836881 (25 bp)
ACCTTCGAAGTGCAGAGAGTTCACC
LOC_Os01g35240
OsAffx.23518.1.S1_at--491--5331Chr01:19836863..19836887 (25 bp)
GAAGTGCAGAGAGTTCACCTAGCCA
LOC_Os01g35240
OsAffx.23518.1.S1_at--904--7331Chr01:19836866..19836890 (25 bp)
GTGCAGAGAGTTCACCTAGCCACTC
LOC_Os01g35240
OsAffx.23518.1.S1_at--822--1352Chr06:19997211..19997699 (25 bp)
AGAGAGTTCACCTAGCCACTCTGGA
NONE
OsAffx.23518.1.S1_at--1145--1151Chr01:19836874..19836898 (25 bp)
AGTTCACCTAGCCACTCTGGAAGCT
LOC_Os01g35240
OsAffx.23518.1.S1_at--513--9671Chr01:19836877..19836901 (25 bp)
TCACCTAGCCACTCTGGAAGCTGGG
LOC_Os01g35240
OsAffx.23518.1.S1_at--566--9991Chr01:19836882..19836906 (25 bp)
TAGCCACTCTGGAAGCTGGGTCAGC
LOC_Os01g35240
OsAffx.23518.1.S1_at--76--3331Chr01:19836886..19836910 (25 bp)
CACTCTGGAAGCTGGGTCAGCGCGT
LOC_Os01g35240
OsAffx.23518.1.S1_at--1101--5391Chr01:19836893..19836917 (25 bp)
GAAGCTGGGTCAGCGCGTCACAGCA
LOC_Os01g35240
OsAffx.23518.1.S1_at--702--1651Chr01:19836904..19836925 (22 bp)
AGCGCGTCACAGCAAATCAGGGATG
LOC_Os01g35240
OsAffx.23518.1.S1_at--343--4651Chr01:19836907..19837411 (25 bp)
GCGTCACAGCAAATCAGGGATGAAG
LOC_Os01g35240
Target Sequence 
ACCTTCGAAGTGCAGAGAGTTCACCTAGCCACTCTGGAAGCTGGGTCAGCGCGTCACAGCAAATCAGGGATGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23518.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis