Browse Element(s) Details


OsAffx.11364.1.S1_at

Description gb:NM_193471.1
DB_XREF= gi:34914025
GEN=OJ1014_G12.28
TID=OsAffx.11364.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1014_G12.28 (OJ1014_G12.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g376605/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37590Os.45923.1.S1_at11/111+21365653..21367927Major Facilitator Superfamily protein, expressed
LOC_Os01g37600OsAffx.21227.2.S1_at11/111+21368717..21374088Agenet domain containing protein, expressed
LOC_Os01g37600OsAffx.21227.1.S1_x_at10/111+21368717..21374088Agenet domain containing protein, expressed
LOC_Os01g37610OsAffx.8980.1.S1_at11/111+21375625..21380557transposon protein, putative, unclassified, expressed
LOC_Os01g37610Os.27639.1.S1_x_at10/111+21375625..21380557transposon protein, putative, unclassified, expressed
LOC_Os01g37630Os.6157.1.S1_at11/111+21383602..21384871hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g37650Os.5258.1.A1_at11/111+21389176..21390528hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g37660OsAffx.11364.1.S1_at5/111+21392308..21392757hypothetical protein
LOC_Os01g37670Os.31606.1.S1_at11/111+21395354..21397056F-box domain containing protein, expressed
LOC_Os01g37690Os.19755.2.S1_a_at11/111+21398344..21403577Vacuolar cation/proton exchanger 1a, putative, expressed
LOC_Os01g37700OsAffx.32106.1.S1_at11/111+21404854..21406169hypothetical protein
LOC_Os01g37700OsAffx.32106.2.S1_x_at5/111+21404854..21406169hypothetical protein
LOC_Os01g37710NANA1+21409660..21413408hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11364.1.S1_at--454--4551Chr01:21390925..21391162 (25 bp)
GCCCACCCACAGTCCTGGAGAGGAA
NONE
OsAffx.11364.1.S1_at--153--6031Chr01:21391155..21391179 (25 bp)
GAGAGGAAGTGCGACCACCGTTTTC
NONE
OsAffx.11364.1.S1_at--1041--10691Chr01:21391182..21391206 (25 bp)
TTGCCCAAGTGGTGATGGAGCGCCA
NONE
OsAffx.11364.1.S1_at--979--4551Chr01:21391201..21391225 (25 bp)
GCGCCAACTGGCAAATCGGTCGGAT
NONE
OsAffx.11364.1.S1_at--930--491Chr01:21391215..21391239 (25 bp)
ATCGGTCGGATTGGCAAGTCAACAA
NONE
OsAffx.11364.1.S1_at--906--6271Chr01:21392307..21392331 (25 bp)
GATGACTCATAGTGGGAAAACCCTG
NONE
OsAffx.11364.1.S1_at--880--8811Chr01:21392386..21392410 (25 bp)
TGTTGTACTACTATGGTGCTCTGGG
LOC_Os01g37660
OsAffx.11364.1.S1_at--1048--7151Chr01:21392445..21392469 (25 bp)
GTCTCAGGAGATGGTGACACCGGTC
LOC_Os01g37660
OsAffx.11364.1.S1_at--209--671Chr01:21392525..21392549 (25 bp)
ATGAATGTTCCCCAACTGATGATGA
LOC_Os01g37660
OsAffx.11364.1.S1_at--597--6031Chr01:21392556..21392580 (25 bp)
GAGATGTCAGATTCCCACTGATTCT
LOC_Os01g37660
OsAffx.11364.1.S1_at--915--2411Chr01:21392665..21392689 (25 bp)
AAAACAGAACTTGCAGTGACTTCAA
LOC_Os01g37660
Target Sequence 
GCCCACCCACAGTCCTGGAGAGGAAGTGCGACCACCGTTTTCGTTTGCCCAAGTGGTGATGGAGCGCCAACTGGCAAATC
GGTCGGATTGGCAAGTCAACAAACATTGTACGGTGGAGCACGGTGGAGGGAAAACACAGATGACTCATAGTGGGAAAACC
CTGAAGAAATTGGCATCAAAGAAAGATTCATTGCTGAAGAAAGTAGAAAAGACAGAATGTTGTACTACTATGGTGCTCTG
GGGGAAGAAGGAGGAAAATCTAGTCATAGAACAAGAGTCTCAGGAGATGGTGACACCGGTCGAGATGCAATCTCAAGATG
AGGGAGGTGAAATGACAAATGAGAAGCTATTAATGCATGAATGTTCCCCAACTGATGATGATTTTGAGAGATGTCAGATT
CCCACTGATTCTGACATTGAAAGACTTAGAGAGGAAGAAGATAATGAAGAGGACAATTTCCAAGAGGTGTCTAACAAAAA
GAAGAACAGGGCTAAGAAAACAGAACTTGCAGTGACTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis