Browse Element(s) Details


OsAffx.11392.3.S1_at

Description tigr:9633.m01465
TID=OsAffx.11392.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1641011/11hypothetical protein
LOC_Os05g126202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g179602/11retrotransposon protein, putative, unclassified
LOC_Os08g200601/11retrotransposon protein, putative, unclassified
LOC_Os08g050601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g425301/11retrotransposon protein, putative, unclassified
LOC_Os04g171401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g221501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16400OsAffx.19421.1.S1_at3/115+9279739..9286058transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16410OsAffx.11392.3.S1_at11/115+9289946..9293114hypothetical protein
LOC_Os05g16410OsAffx.11392.2.S1_x_at4/115+9289946..9293114hypothetical protein
LOC_Os05g16410Os.27004.1.A1_at1/115+9289946..9293114hypothetical protein
LOC_Os05g16410OsAffx.25352.1.S1_at1/115+9289946..9293114hypothetical protein
LOC_Os05g16410OsAffx.30367.1.S1_at1/115+9289946..9293114hypothetical protein
LOC_Os05g16410OsAffx.25984.1.S1_x_at1/115+9289946..9293114hypothetical protein
LOC_Os05g16410OsAffx.25984.1.S1_at1/115+9289946..9293114hypothetical protein
LOC_Os05g16420Os.40030.1.S1_s_at8/115+9297346..9297847SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16430Os.27474.1.S1_at9/115+9301003..9307448SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16430Os.53142.1.S1_at3/115+9301003..9307448SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16440NANA5+9316009..9316578hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11392.3.S1_at--237--9171Chr05:9290545..9290569 (25 bp)
TGCCCACACGGCACAATAACGTTGA
LOC_Os05g16410
OsAffx.11392.3.S1_at--561--6654Chr06:14015449..14015469 (21 bp)
GTTGAGGAAGAATCGCCACCTCTGT
NONE
OsAffx.11392.3.S1_at--1102--3751Chr05:9290370..9290394 (25 bp)
CTCTTCCTATTCCTAAGCCAAGTGA
LOC_Os05g16410
OsAffx.11392.3.S1_at--842--3712Chr04:9571469..9571488 (20 bp)
CTACGCTATGCCTTTCTGAATGGTG
NONE
OsAffx.11392.3.S1_at--478--811Chr05:9290163..9290187 (25 bp)
ATGGTGATGCGGAGTCTCCAGTCAT
LOC_Os05g16410
OsAffx.11392.3.S1_at--381--1312Chr03:18840986..18841010 (25 bp)
AGAGGGAGACGACCCGACTTATCGC
NONE
OsAffx.11392.3.S1_at--995--31Chr05:9290079..9290103 (25 bp)
ATTGTGCTGCTTTTGGCTATTCCCT
LOC_Os05g16410
OsAffx.11392.3.S1_at--1017--8291Chr05:9290065..9290089 (25 bp)
GGCTATTCCCTCCAAGATTTAAAAG
LOC_Os05g16410
OsAffx.11392.3.S1_at--193--9836Chr04:9857200..9857224 (25 bp)
TAAAAGGCATCAGTCCGACCCTTTG
LOC_Os04g17960
OsAffx.11392.3.S1_at--106--531Chr05:9290016..9290040 (25 bp)
ATCGCATTCCCTTAGATCCATCTTG
LOC_Os05g16410
OsAffx.11392.3.S1_at--900--10737Chr05:7223732..7223756 (25 bp)
TTGCACACCATCTAGGGAACCTCAG
LOC_Os05g12620
Target Sequence 
TGCCCACACGGCACAATAACGTTGAGGAAGAATCGCCACCTCTGTCCCTGTGTTGCACGGAGCCTCTTCCTATTCCTAAG
CCAAGTGAGGCAGTGATGGCAATTTCTCCATTCGAGCCCCCAGAGTCTATTTTCGATGAATCCATTGAAGAATTCAATGA
AAGGGAGGATGAATCTGGAGAAACGATTGATCTACCAAAAATGGATCAGCCATCACGAGCCCCAATTGAGCTAAAGCCCT
TACCTTCAGGCCTACGCTATGCCTTTCTGAATGGTGATGCGGAGTCTCCAGTCATTATAAGTGACGAACTCTCTGAGAGG
GAGACGACCCGACTTATCGCCGTTTTAGAAAAACATTGTGCTGCTTTTGGCTATTCCCTCCAAGATTTAAAAGGCATCAG
TCCGACCCTTTGCACCCATCGCATTCCCTTAGATCCATCTTGCACACCATCTAGGGAACCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11392.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis