Browse Element(s) Details


OsAffx.11403.1.S1_at

Description gb:NM_192532.1
DB_XREF= gi:34912147
GEN=P0712E02.16
TID=OsAffx.11403.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0712E02.16 (P0712E02.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g403509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40320Os.54352.1.S1_at10/111+23082927..23085727DNA damage binding protein 1, putative
LOC_Os01g40320OsAffx.11402.1.S1_at10/111+23082927..23085727DNA damage binding protein 1, putative
LOC_Os01g40330Os.9702.1.S1_a_at11/111+23094797..23099463bZIP, putative, expressed
LOC_Os01g40340Os.7323.1.S1_at11/111+23103794..23109607SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os01g40340Os.45995.1.S1_x_at11/111+23103794..23109607SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os01g40350OsAffx.11403.1.S1_at9/111+23109762..23110364hypothetical protein
LOC_Os01g40360OsAffx.11404.1.S1_s_at11/111+23112474..23114814amino acid transporter family protein, putative
LOC_Os01g40360Os.21565.1.S1_at1/111+23112474..23114814amino acid transporter family protein, putative
LOC_Os01g40370OsAffx.23603.2.S1_at6/111+23117960..23120571SIT4 phosphatase-associated family protein, putative
LOC_Os01g40380OsAffx.23604.1.S1_at11/111+23124473..23125814hypothetical protein
LOC_Os01g40380OsAffx.11404.1.S1_s_at1/111+23124473..23125814hypothetical protein
LOC_Os01g40390OsAffx.23603.1.S1_at11/111+23130534..23135052hypothetical protein
LOC_Os01g40390OsAffx.27081.1.S1_x_at1/111+23130534..23135052hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11403.1.S1_at--745--8131Chr01:23110090..23110114 (25 bp)
GGAAATTCCCAACGACATACCGAAG
LOC_Os01g40350
OsAffx.11403.1.S1_at--763--2591Chr01:23110080..23110104 (25 bp)
AACGACATACCGAAGCACCATTACA
LOC_Os01g40350
OsAffx.11403.1.S1_at--264--5091Chr01:23110066..23110090 (25 bp)
GCACCATTACACGTTCTACAAGAGA
LOC_Os01g40350
OsAffx.11403.1.S1_at--582--7031Chr01:23109996..23110020 (25 bp)
GTACAAGCTCCATTACACGTTGGAA
LOC_Os01g40350
OsAffx.11403.1.S1_at--547--10711Chr01:23109977..23110001 (25 bp)
TTGGAAACGAAGCACCGCAACCGCA
LOC_Os01g40350
OsAffx.11403.1.S1_at--591--3331Chr01:23109951..23109975 (25 bp)
CACGGCGAATTCCAAAGACGGCATA
LOC_Os01g40350
OsAffx.11403.1.S1_at--30--2771Chr01:23109937..23109961 (25 bp)
AAGACGGCATAAGGATGGCTGCCAT
LOC_Os01g40350
OsAffx.11403.1.S1_at--219--5371Chr01:23109803..23109827 (25 bp)
GAAGAGCGCCTCATGGAGAGGAACT
LOC_Os01g40350
OsAffx.11403.1.S1_at--534--6191Chr01:23109786..23109810 (25 bp)
GAGGAACTACACAGCACAGGTGCAA
LOC_Os01g40350
OsAffx.11403.1.S1_at--764--5051Chr01:23109731..23109755 (25 bp)
GCAGCGTAAGCTCAAGTGAAGATCA
NONE
OsAffx.11403.1.S1_at--948--7311Chr01:23109716..23109740 (25 bp)
GTGAAGATCAATTGGCCCTCTTTAA
NONE
Target Sequence 
GGAAATTCCCAACGACATACCGAAGCACCATTACACGTTCTACAAGAGAACTACAAGGAAATTGGCGGTTGGACGTGCTC
TACAAGAGCCAGGAGTACAAGCTCCATTACACGTTGGAAACGAAGCACCGCAACCGCAACACGGCGAATTCCAAAGACGG
CATAAGGATGGCTGCCATGGAGAACCTCTCCAACCTGAAGCCGGAGCCGGCGGCGAGCAAGCAGTTCGAGGAGCGCCGCC
ACCGGAGCATCGACGTCGGCGCCCTCAACTACGATCCACGCGAGCAGGAAGAGCGCCTCATGGAGAGGAACTACACAGCA
CAGGTGCAATGTGCAGCCCGGGGAGTCGAGTAGTAGAAAGCAGCGTAAGCTCAAGTGAAGATCAATTGGCCCTCTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis