Browse Element(s) Details


OsAffx.11445.1.S1_s_at

Description tigr:9629.m04100
TID=OsAffx.11445.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4272011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42690Os.35061.1.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_x_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42700Os.8697.1.S2_at11/111+24609589..24612154expressed protein
LOC_Os01g42700Os.8697.1.S1_at11/111+24609589..24612154expressed protein
LOC_Os01g42710Os.1021.1.S1_at9/111+24619385..24626543LSD1 zinc finger family protein, expressed
LOC_Os01g42720Os.34525.2.S1_x_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.2.S1_at11/111+24626992..24628080expressed protein
LOC_Os01g42720OsAffx.11445.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_x_at11/111+24626992..24628080expressed protein
LOC_Os01g42730Os.41283.1.S1_at8/111+24639449..24644008GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g42740Os.20364.1.S1_at1/111+24652185..24652514Ammonium transporter 2, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11445.1.S1_s_at--1148--3371Chr01:24627581..24627605 (25 bp)
CAGCGCTGCTTGAACTGCCTTGGAA
LOC_Os01g42720
OsAffx.11445.1.S1_s_at--921--1651Chr01:24627582..24627606 (25 bp)
AGCGCTGCTTGAACTGCCTTGGAAA
LOC_Os01g42720
OsAffx.11445.1.S1_s_at--116--4571Chr01:24627583..24627607 (25 bp)
GCGCTGCTTGAACTGCCTTGGAAAA
LOC_Os01g42720
OsAffx.11445.1.S1_s_at--64--4771Chr01:24627585..24627609 (25 bp)
GCTGCTTGAACTGCCTTGGAAAAGG
LOC_Os01g42720
OsAffx.11445.1.S1_s_at--778--5451Chr01:24627592..24627616 (25 bp)
GAACTGCCTTGGAAAAGGCTACGCT
LOC_Os01g42720
OsAffx.11445.1.S1_s_at--812--3811Chr01:24627595..24627619 (25 bp)
CTGCCTTGGAAAAGGCTACGCTTGA
LOC_Os01g42720
OsAffx.11445.1.S1_s_at--853--3591Chr01:24627599..24627623 (25 bp)
CTTGGAAAAGGCTACGCTTGAAGGG
LOC_Os01g42720
OsAffx.11445.1.S1_s_at--696--10591Chr01:24627616..24627640 (25 bp)
TTGAAGGGGCAATGCGTCCTTGCGT
LOC_Os01g42720
OsAffx.11445.1.S1_s_at--877--4651Chr01:24627629..24627653 (25 bp)
GCGTCCTTGCGTTTGGCTTATCGTT
LOC_Os01g42720
OsAffx.11445.1.S1_s_at--280--7271Chr01:24627631..24627655 (25 bp)
GTCCTTGCGTTTGGCTTATCGTTGG
LOC_Os01g42720
OsAffx.11445.1.S1_s_at--854--4291Chr01:24627633..24627657 (25 bp)
CCTTGCGTTTGGCTTATCGTTGGCC
LOC_Os01g42720
Target Sequence 
CAGCGCTGCTTGAACTGCCTTGGAAAAGGCTACGCTTGAAGGGGCAATGCGTCCTTGCGTTTGGCTTATCGTTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11445.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis