Browse Element(s) Details


OsAffx.11447.2.S1_s_at

Description tigr:9629.m04117
TID=OsAffx.11447.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4289011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42830Os.5871.1.S1_s_at11/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42830Os.5871.2.S1_at9/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42840OsAffx.21359.1.S1_at11/111+24706930..24707445hypothetical protein
LOC_Os01g42850Os.1041.1.S1_x_at11/111+24707484..24713535E1-like protein-activating enzyme Gsa7p/Apg7p containing protein, expressed
LOC_Os01g42860NANA1+24719919..24720137subtilisin-chymotrypsin inhibitor 2, putative, expressed
LOC_Os01g42870Os.1044.1.S1_at11/111+24721928..24723659Transferase family protein, expressed
LOC_Os01g42880Os.21615.1.S1_at11/111+24724406..24727553Transferase family protein, expressed
LOC_Os01g42890OsAffx.11447.2.S1_s_at11/111+24728454..24728888hypothetical protein
LOC_Os01g42900Os.41269.1.S1_at11/111+24735317..24737308ABC-2 type transporter family protein, expressed
LOC_Os01g42909NANA1+24742567..24743696hypothetical protein
LOC_Os01g42920NANA1+24747331..24749991retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g42934OsAffx.10633.1.S1_at1/111+24751060..24753178retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11447.2.S1_s_at--380--5931Chr01:24728730..24728754 (25 bp)
GAGCAGCGGCACTGCGACGGTGGTC
LOC_Os01g42890
OsAffx.11447.2.S1_s_at--436--1631Chr01:24728726..24728750 (25 bp)
AGCGGCACTGCGACGGTGGTCGGCG
LOC_Os01g42890
OsAffx.11447.2.S1_s_at--201--4212Chr04:13791090..13791123 (25 bp)
CCGCCGTCGTGAAGACCAACGCCGG
NONE
OsAffx.11447.2.S1_s_at--500--4591Chr01:24728506..24728530 (25 bp)
GCGAAGTCCATGAGCCGAAGCACCA
LOC_Os01g42890
OsAffx.11447.2.S1_s_at--1009--4091Chr01:24728505..24728529 (25 bp)
CGAAGTCCATGAGCCGAAGCACCAG
LOC_Os01g42890
OsAffx.11447.2.S1_s_at--87--1151Chr01:24728502..24728526 (25 bp)
AGTCCATGAGCCGAAGCACCAGGCA
LOC_Os01g42890
OsAffx.11447.2.S1_s_at--672--9231Chr01:24728500..24728524 (25 bp)
TCCATGAGCCGAAGCACCAGGCACA
LOC_Os01g42890
OsAffx.11447.2.S1_s_at--749--691Chr01:24728497..24728521 (25 bp)
ATGAGCCGAAGCACCAGGCACACAC
LOC_Os01g42890
OsAffx.11447.2.S1_s_at--491--5871Chr01:24728495..24728519 (25 bp)
GAGCCGAAGCACCAGGCACACACAG
LOC_Os01g42890
OsAffx.11447.2.S1_s_at--349--5391Chr01:24728490..24728514 (25 bp)
GAAGCACCAGGCACACACAGCCATG
LOC_Os01g42890
OsAffx.11447.2.S1_s_at--606--1511Chr01:24728488..24728512 (25 bp)
AGCACCAGGCACACACAGCCATGGA
LOC_Os01g42890
Target Sequence 
GAGCAGCGGCACTGCGACGGTGGTCGGCGGCGACAGCGACTGCCGCCGCGCACACCACGCCTACCTCGCCGCTGCCGCCA
CGAGGCCCGAGGCCCCCATTGCGTCGTCCCCCAATGCCAGGCTCTGCCGCCTCATCGCCCGCGACGACCTCGCCGAGGCC
ACGCGCCTCGTCGACCGCTCACGCGGGGAGACACCCGACGCCGCCGTCGTGAAGACCAACGCCGGCGAAGTCCATGAGCC
GAAGCACCAGGCACACACAGCCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11447.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis