Browse Element(s) Details


OsAffx.11449.1.S1_at

Description gb:NM_192795.1
DB_XREF= gi:34912673
GEN=P0686E09.6
TID=OsAffx.11449.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0686E09.6 (P0686E09.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4296011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42950Os.14392.1.S1_at11/111+24755490..24763139protein kinase family protein, putative, expressed
LOC_Os01g42960OsAffx.11449.1.S1_at11/111+24787885..24791118TPR Domain containing protein, expressed
LOC_Os01g42970Os.1486.1.S1_s_at10/111+24798779..24805279expressed protein
LOC_Os01g42970Os.46377.1.S1_at10/111+24798779..24805279expressed protein
LOC_Os01g42980Os.1487.1.S1_at11/111+24807746..24810562ribosomal protein L22 family protein, putative, expressed
LOC_Os01g42980Os.1487.2.S1_x_at10/111+24807746..24810562ribosomal protein L22 family protein, putative, expressed
LOC_Os01g42990OsAffx.11451.4.S1_x_at11/111+24811397..24814679expressed protein
LOC_Os01g42990Os.33175.1.S1_at11/111+24811397..24814679expressed protein
LOC_Os01g42990OsAffx.11451.3.S1_x_at7/111+24811397..24814679expressed protein
LOC_Os01g42990OsAffx.11451.2.S1_x_at4/111+24811397..24814679expressed protein
LOC_Os01g43000OsAffx.11451.5.S1_x_at11/111+24815746..24818240transposon protein, putative, unclassified
LOC_Os01g43000OsAffx.11451.5.S1_at10/111+24815746..24818240transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11449.1.S1_at--158--9771Chr01:24790215..24790239 (25 bp)
TAAGGCGAGCTTCATCCTATGCCAA
LOC_Os01g42960
OsAffx.11449.1.S1_at--1024--7771Chr01:24790386..24790410 (25 bp)
GGTGCTTCATAAAGAGCTTCCTGCT
LOC_Os01g42960
OsAffx.11449.1.S1_at--1003--4911Chr01:24790401..24790425 (25 bp)
GCTTCCTGCTGATACAGAGGTTGCA
LOC_Os01g42960
OsAffx.11449.1.S1_at--610--3331Chr01:24790430..24790454 (25 bp)
CACTGTTCCATGCTCAAGTTGCATT
LOC_Os01g42960
OsAffx.11449.1.S1_at--705--8731Chr01:24790521..24790545 (25 bp)
TGTAGAACAACTCCGTGCTGCCATA
LOC_Os01g42960
OsAffx.11449.1.S1_at--266--7351Chr01:24790799..24790823 (25 bp)
GTGCACACTAATTACACCTTCGGTG
LOC_Os01g42960
OsAffx.11449.1.S1_at--454--7771Chr01:24790820..24790844 (25 bp)
GGTGAACTCCCTTTGCAGCGAATGC
LOC_Os01g42960
OsAffx.11449.1.S1_at--177--9151Chr01:24790842..24790866 (25 bp)
TGCCCCTCGCTGAATTTCCTAAAGG
LOC_Os01g42960
OsAffx.11449.1.S1_at--586--291Chr01:24790970..24790994 (25 bp)
ATAGCCCTATGGTCGCGAAGGCGGA
LOC_Os01g42960
OsAffx.11449.1.S1_at--1137--5951Chr01:24790993..24791017 (25 bp)
GAGAACGTGCGGATAGTCCCAACAT
LOC_Os01g42960
OsAffx.11449.1.S1_at--980--2691Chr01:24791064..24791088 (25 bp)
AAGCTTGCATGTTCTGCGCTACTCA
LOC_Os01g42960
Target Sequence 
TAAGGCGAGCTTCATCCTATGCCAAGNTNGAGCGTTGGGCTGATTGTGTGCGGGACTATGAGGTGCTTCATAAAGAGCTT
CCTGCTGATACAGAGGTTGCAGAAGCACTGTTCCATGCTCAAGTTGCATTGAAGACAACTCGTGGTGAGGATGTATCGAA
TATGAAATTTGGAGGAGAGGTTGAGATGGTAACCAGTGTAGAACAACTCCGTGCTGCCATAGGATCACCAGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGGTGTCTGTTGTTTACTTCATGTCAATCATGAATCAGCAGTGCACACTAATTACACCT
TCGGTGAACTCCCTTTGCAGCGAATGCCCCTCGCTGAATTTCCTAAAGGTNNNNNNAAATGTTGAAGATAGCCCTATGGT
CGCGAAGGCGGAGAACGTGCGGATAGTCCCAACATTCAAGATATACAAAGATGGGGTGAAGGTGAAGGAAATGATCTGCC
CAAGCTTGCATGTTCTGCGCTACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis