Browse Element(s) Details


OsAffx.11451.5.S1_x_at

Description tigr:9629.m04129
TID=OsAffx.11451.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SWIM zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4300011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42960OsAffx.11449.1.S1_at11/111+24787885..24791118TPR Domain containing protein, expressed
LOC_Os01g42970Os.1486.1.S1_s_at10/111+24798779..24805279expressed protein
LOC_Os01g42970Os.46377.1.S1_at10/111+24798779..24805279expressed protein
LOC_Os01g42980Os.1487.1.S1_at11/111+24807746..24810562ribosomal protein L22 family protein, putative, expressed
LOC_Os01g42980Os.1487.2.S1_x_at10/111+24807746..24810562ribosomal protein L22 family protein, putative, expressed
LOC_Os01g42990OsAffx.11451.4.S1_x_at11/111+24811397..24814679expressed protein
LOC_Os01g42990Os.33175.1.S1_at11/111+24811397..24814679expressed protein
LOC_Os01g42990OsAffx.11451.3.S1_x_at7/111+24811397..24814679expressed protein
LOC_Os01g42990OsAffx.11451.2.S1_x_at4/111+24811397..24814679expressed protein
LOC_Os01g43000OsAffx.11451.5.S1_x_at11/111+24815746..24818240transposon protein, putative, unclassified
LOC_Os01g43000OsAffx.11451.5.S1_at10/111+24815746..24818240transposon protein, putative, unclassified
LOC_Os01g43010OsAffx.26141.4.S1_at11/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.26141.4.S1_x_at9/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.26141.3.S1_x_at9/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010Os.57359.1.S1_at8/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.11451.3.S1_x_at1/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.11451.2.S1_x_at1/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43020Os.16523.1.S1_at11/111+24825687..24831704CTP synthase, putative, expressed
LOC_Os01g43020OsAffx.24925.1.S1_x_at1/111+24825687..24831704CTP synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11451.5.S1_x_at--1080--9811Chr01:24816736..24816760 (25 bp)
TAAAATCTGTATGCGGAGGCCACCA
LOC_Os01g43000
OsAffx.11451.5.S1_x_at--7--6231Chr01:24816721..24816745 (25 bp)
GAGGCCACCACCTATGTTGGTGCAA
LOC_Os01g43000
OsAffx.11451.5.S1_x_at--1096--2391Chr01:24816644..24816668 (25 bp)
AAAAATCCTTGGCAGCTTGCAGCAA
LOC_Os01g43000
OsAffx.11451.5.S1_x_at--804--3011Chr01:24816527..24816551 (25 bp)
AATGCAGCTGCAGGCGATTCGATAG
LOC_Os01g43000
OsAffx.11451.5.S1_x_at--920--7291Chr01:24816488..24816512 (25 bp)
GTGCCCATGCTCTGAAAGTTCTTGA
LOC_Os01g43000
OsAffx.11451.5.S1_x_at--234--251Chr01:24816455..24816479 (25 bp)
ATATCAAGTCATTACCACCACACTA
LOC_Os01g43000
OsAffx.11451.5.S1_x_at--1036--2491Chr01:24816351..24816375 (25 bp)
AACATGGATGCTATGCTTCGCTACA
LOC_Os01g43000
OsAffx.11451.5.S1_x_at--976--631Chr01:24815989..24816363 (25 bp)
ATGCTTCGCTACAGTGTTATCATTC
LOC_Os01g43000
OsAffx.11451.5.S1_x_at--579--6791Chr01:24815974..24815998 (25 bp)
GTTATCATTCTGTCCATTATTTCTC
LOC_Os01g43000
OsAffx.11451.5.S1_x_at--31--1671Chr01:24815963..24815987 (25 bp)
GTCCATTATTTCTCTAAACCCTCAA
LOC_Os01g43000
OsAffx.11451.5.S1_x_at--1092--2571Chr01:24815947..24815971 (25 bp)
AACCCTCAAATTTTCTTTGTCTGCA
LOC_Os01g43000
Target Sequence 
TAAAATCTGTATGCGGAGGCCACCACCTATGTTGGTGCAAGCTAGCAAGTTGTATACACCTATTATATTTGAAGCTTTTC
AAGGTGAATATGAAAAATCCTTGGCAGCTTGCAGCAAGGAATTGGATGGTAACAATGAATATCTAGTAGGAGATTTCACC
TATGAGGAGGAGTACAAAGTTATCGGAGATCCTTTGAAGCAAACAGTTCAATGCAGCTGCAGGCGATTCGATAGAATTGG
GATATTGTGTGCCCATGCTCTGAAAGTTCTTGATTTGATGAATATCAAGTCATTACCACCACACTACGTGCTGAAGCGAT
GGACACGAGAAGCAAGGAGTGGAACTATACAAGACAATTTGGGGAGAAATATAATCGAAAATCCAAACATGGATGCTATG
CTTCGCTACAGTGTTATCATTCTGTCCATTATTTCTCTAAACCCTCAAATTTTCTTTGTCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11451.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis