Browse Element(s) Details


Os.46377.1.S1_at

Description gb:AK112116.1
DB_XREF= gi:37988779
TID=Os.46377.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46377 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-E06, full insert sequence.
FL= gb:AK111682.1 gb:AK112116.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4297010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42960OsAffx.11449.1.S1_at11/111+24787885..24791118TPR Domain containing protein, expressed
LOC_Os01g42970Os.1486.1.S1_s_at10/111+24798779..24805279expressed protein
LOC_Os01g42970Os.46377.1.S1_at10/111+24798779..24805279expressed protein
LOC_Os01g42980Os.1487.1.S1_at11/111+24807746..24810562ribosomal protein L22 family protein, putative, expressed
LOC_Os01g42980Os.1487.2.S1_x_at10/111+24807746..24810562ribosomal protein L22 family protein, putative, expressed
LOC_Os01g42990OsAffx.11451.4.S1_x_at11/111+24811397..24814679expressed protein
LOC_Os01g42990Os.33175.1.S1_at11/111+24811397..24814679expressed protein
LOC_Os01g42990OsAffx.11451.3.S1_x_at7/111+24811397..24814679expressed protein
LOC_Os01g42990OsAffx.11451.2.S1_x_at4/111+24811397..24814679expressed protein
LOC_Os01g43000OsAffx.11451.5.S1_x_at11/111+24815746..24818240transposon protein, putative, unclassified
LOC_Os01g43000OsAffx.11451.5.S1_at10/111+24815746..24818240transposon protein, putative, unclassified
LOC_Os01g43010OsAffx.26141.4.S1_at11/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.26141.4.S1_x_at9/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.26141.3.S1_x_at9/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010Os.57359.1.S1_at8/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.11451.3.S1_x_at1/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.11451.2.S1_x_at1/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43020Os.16523.1.S1_at11/111+24825687..24831704CTP synthase, putative, expressed
LOC_Os01g43020OsAffx.24925.1.S1_x_at1/111+24825687..24831704CTP synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001709biological_processcell fate determination
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003723molecular_functionRNA binding
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46377.1.S1_at--142--2031Chr01:24798957..24798981 (25 bp)
ACTACTTGGGTAGGTATGTCGTCTT
LOC_Os01g42970
Os.46377.1.S1_at--108--7211Chr01:24798940..24798964 (25 bp)
GTCGTCTTTGTAGATCTCTGTGGCA
LOC_Os01g42970
Os.46377.1.S1_at--513--6951Chr01:24798931..24798955 (25 bp)
GTAGATCTCTGTGGCATCTGATGTA
LOC_Os01g42970
Os.46377.1.S1_at--757--4971Chr01:24798918..24798942 (25 bp)
GCATCTGATGTATTCCCTGTTATTT
LOC_Os01g42970
Os.46377.1.S1_at--257--4191Chr01:24798904..24798928 (25 bp)
CCCTGTTATTTAGTGGTTTTAGCTG
LOC_Os01g42970
Os.46377.1.S1_at--940--10231Chr01:24798873..24798897 (25 bp)
TTTGAGTATATGCACCTTTCGGTTT
LOC_Os01g42970
Os.46377.1.S1_at--785--5031Chr01:24798862..24798886 (25 bp)
GCACCTTTCGGTTTGGGCGTTCATG
LOC_Os01g42970
Os.46377.1.S1_at--588--8371Chr01:24798847..24798871 (25 bp)
GGCGTTCATGTGCAGGTGACATCAT
LOC_Os01g42970
Os.46377.1.S1_at--1126--5011Chr01:24798836..24798860 (25 bp)
GCAGGTGACATCATATGCTATAGTA
LOC_Os01g42970
Os.46377.1.S1_at--894--5691Chr01:24798801..24798825 (25 bp)
GACTTTGTTGAGCATATCTAACTAA
LOC_Os01g42970
Os.46377.1.S1_at--93--9831Chr01:24798779..24798803 (25 bp)
TAAAATATATACTACCTCTGTTGTC
NONE
Target Sequence 
ACTACTTGGGTAGGTATGTCGTCTTTGTAGATCTCTGTGGCATCTGATGTATTCCCTGTTATTTAGTGGTTTTAGCTGAT
GCATTTTGAGTATATGCACCTTTCGGTTTGGGCGTTCATGTGCAGGTGACATCATATGCTATAGTATTTTTTTATTGACT
TTGTTGAGCATATCTAACTAAAATATATACTACCTCTGTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis