Browse Element(s) Details


Os.1487.2.S1_x_at

Description gb:NM_192797.1
DB_XREF= gi:34912677
GEN=P0686E09.8
TID=Os.1487.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1487 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0686E09.8 (P0686E09.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0686E09.8 (P0686E09.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4298010/11ribosomal protein L22 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42960OsAffx.11449.1.S1_at11/111+24787885..24791118TPR Domain containing protein, expressed
LOC_Os01g42970Os.1486.1.S1_s_at10/111+24798779..24805279expressed protein
LOC_Os01g42970Os.46377.1.S1_at10/111+24798779..24805279expressed protein
LOC_Os01g42980Os.1487.1.S1_at11/111+24807746..24810562ribosomal protein L22 family protein, putative, expressed
LOC_Os01g42980Os.1487.2.S1_x_at10/111+24807746..24810562ribosomal protein L22 family protein, putative, expressed
LOC_Os01g42990OsAffx.11451.4.S1_x_at11/111+24811397..24814679expressed protein
LOC_Os01g42990Os.33175.1.S1_at11/111+24811397..24814679expressed protein
LOC_Os01g42990OsAffx.11451.3.S1_x_at7/111+24811397..24814679expressed protein
LOC_Os01g42990OsAffx.11451.2.S1_x_at4/111+24811397..24814679expressed protein
LOC_Os01g43000OsAffx.11451.5.S1_x_at11/111+24815746..24818240transposon protein, putative, unclassified
LOC_Os01g43000OsAffx.11451.5.S1_at10/111+24815746..24818240transposon protein, putative, unclassified
LOC_Os01g43010OsAffx.26141.4.S1_at11/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.26141.4.S1_x_at9/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.26141.3.S1_x_at9/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010Os.57359.1.S1_at8/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.11451.3.S1_x_at1/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.11451.2.S1_x_at1/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43020Os.16523.1.S1_at11/111+24825687..24831704CTP synthase, putative, expressed
LOC_Os01g43020OsAffx.24925.1.S1_x_at1/111+24825687..24831704CTP synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1487.2.S1_x_at--162--8871Chr01:24809005..24809029 (25 bp)
TGATGCTATGGTTCCTGTTTCTTCT
LOC_Os01g42980
Os.1487.2.S1_x_at--772--10251Chr01:24809032..24809056 (25 bp)
TTTGACACCTCCACTTGGTGATGGA
LOC_Os01g42980
Os.1487.2.S1_x_at--676--2911NONE
AAGGATATCAAGCAGAGCCCCAAGA
NONE
Os.1487.2.S1_x_at--718--5351Chr01:24809670..24809694 (25 bp)
GAAGATGCCCTGTTGCAGTTGCAAG
LOC_Os01g42980
Os.1487.2.S1_x_at--313--2391Chr01:24809716..24809854 (25 bp)
AAACTGTATATCATTCTGCTCGTGC
LOC_Os01g42980
Os.1487.2.S1_x_at--935--9091Chr01:24809846..24809870 (25 bp)
TGCTCGTGCCAATGCAGCTCACAAT
LOC_Os01g42980
Os.1487.2.S1_x_at--825--1571Chr01:24809861..24809885 (25 bp)
AGCTCACAATCACGGACTGGATCCT
LOC_Os01g42980
Os.1487.2.S1_x_at--685--2791Chr01:24810038..24810062 (25 bp)
AAGAGGTTGTCCTACCATGCCAAAG
LOC_Os01g42980
Os.1487.2.S1_x_at--939--8871Chr01:24810081..24810105 (25 bp)
TGAGACCGAGGTGCAGACTGACAGT
LOC_Os01g42980
Os.1487.2.S1_x_at--362--8071Chr01:24810187..24810211 (25 bp)
GGAGAAGCAGCTAATGCCGCACCGT
LOC_Os01g42980
Os.1487.2.S1_x_at--724--1771Chr01:24810207..24810231 (25 bp)
ACCGTCTTATCGAGGTTAGCCCGAG
LOC_Os01g42980
Target Sequence 
TGATGCTATGGTTCCTGTTTCTTCTCCTTTGACACCTCCACTTGGTGATGGAGAACAAACTGACAAAAAGGGAGCAATTG
TTAAGCGGCTGAAGGTCCAAGCCATCAAGAAGGATATCAAGCAGAGCCCCAAGAAGGTGAATCTGGTAGCAAAGCTGGTT
CGAGGAATGCGTGTGGAAGATGCCCTGTTGCAGTTGCAAGTGACAGTTAAAAGGGCTGCAAAAACTGTATATCATTCTGC
TCGTGCCAATGCAGCTCACAATCACGGACTGGATCCTGATAAACTTATTGTGGAAGAGGCTTTTGTTGGGAAAGGACTTT
ACCTGAAGAGGTTGTCCTACCATGCCAAAGGGCGGTGTGGCGTCATGGTGAGACCGAGGTGCAGACTGACAGTAGTGGTT
CGAGAGGCTACCGCTGAGGAAGAGGCAAAGATCGCGAAACTCAGAGTCAGCAACTATAAGAAGCTGACCAGAAAGGAGAA
GCAGCTAATGCCGCACCGTCTTATCGAGGTTAGCCCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1487.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis