Browse Element(s) Details


Os.57359.1.S1_at

Description gb:AK111368.1
DB_XREF= gi:32996577
TID=Os.57359.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57359 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A02, full insert sequence.
FL= gb:AK111368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g430108/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42970Os.1486.1.S1_s_at10/111+24798779..24805279expressed protein
LOC_Os01g42970Os.46377.1.S1_at10/111+24798779..24805279expressed protein
LOC_Os01g42980Os.1487.1.S1_at11/111+24807746..24810562ribosomal protein L22 family protein, putative, expressed
LOC_Os01g42980Os.1487.2.S1_x_at10/111+24807746..24810562ribosomal protein L22 family protein, putative, expressed
LOC_Os01g42990OsAffx.11451.4.S1_x_at11/111+24811397..24814679expressed protein
LOC_Os01g42990Os.33175.1.S1_at11/111+24811397..24814679expressed protein
LOC_Os01g42990OsAffx.11451.3.S1_x_at7/111+24811397..24814679expressed protein
LOC_Os01g42990OsAffx.11451.2.S1_x_at4/111+24811397..24814679expressed protein
LOC_Os01g43000OsAffx.11451.5.S1_x_at11/111+24815746..24818240transposon protein, putative, unclassified
LOC_Os01g43000OsAffx.11451.5.S1_at10/111+24815746..24818240transposon protein, putative, unclassified
LOC_Os01g43010OsAffx.26141.4.S1_at11/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.26141.4.S1_x_at9/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.26141.3.S1_x_at9/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010Os.57359.1.S1_at8/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.11451.3.S1_x_at1/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.11451.2.S1_x_at1/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43020Os.16523.1.S1_at11/111+24825687..24831704CTP synthase, putative, expressed
LOC_Os01g43020OsAffx.24925.1.S1_x_at1/111+24825687..24831704CTP synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57359.1.S1_at--684--10631Chr01:24823795..24823819 (25 bp)
TTGCCGAGGTCGAAGGATATTGGTT
LOC_Os01g43010
Os.57359.1.S1_at--697--5311Chr01:24823806..24823830 (25 bp)
GAAGGATATTGGTTCTCCCTTGCTT
LOC_Os01g43010
Os.57359.1.S1_at--977--10231Chr01:24823812..24823836 (25 bp)
TATTGGTTCTCCCTTGCTTCTCGAT
LOC_Os01g43010
Os.57359.1.S1_at--594--4911NONE
GCTTCTCGATCAAGGCACAACGTGT
NONE
Os.57359.1.S1_at--709--3291Chr01:24824473..24824497 (25 bp)
CACAACGTGTTGAAAAATGGACTTT
LOC_Os01g43010
Os.57359.1.S1_at--701--5491Chr01:24824510..24824534 (25 bp)
GAACAGACAGTTCTCCCTAAACAGA
LOC_Os01g43010
Os.57359.1.S1_at--707--3411Chr01:24824531..24824555 (25 bp)
CAGAGAGTACAAAGCTTCGGGTTTA
LOC_Os01g43010
Os.57359.1.S1_at--37--4871Chr01:24824544..24824568 (25 bp)
GCTTCGGGTTTATAAGAACTTGCAA
LOC_Os01g43010
Os.57359.1.S1_at--784--7911NONE
GGATTACAAAGCTTCTAGTTTACAA
NONE
Os.57359.1.S1_at--283--2291Chr01:24824599..24824623 (25 bp)
AAACTTGCAAGATTAGGATTAGCGA
LOC_Os01g43010
Os.57359.1.S1_at--872--8831Chr01:24824714..24824738 (25 bp)
TGATAAGTCACCTGTACAATGTCGT
NONE
Target Sequence 
TTGCCGAGGTCGAAGGATATTGGTTCTCCCTTGCTTCTCGATCAAGGCACAACGTGTTGAAAAATGGACTTTTTTCAGAA
CAAAGAACAGACAGTTCTCCCTAAACAGAGAGTACAAAGCTTCGGGTTTATAAGAACTTGCAAGATTAGGATTACAAAGC
TTCTAGTTTACAAAAACTTGCAAGATTAGGATTAGCGATTGATTTATCTATCAAAGGGATGTTTATAAGAACTTGCAAGA
TTAGGATTAGCGATTGGTTTATCTATCAAAGAGATGGTTTATAAGAGATGATAAGTCACCTGTACAATGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis