Browse Element(s) Details


Os.1487.1.S1_at

Description gb:AK073157.1
DB_XREF= gi:32983180
TID=Os.1487.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1487 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0686E09.8 (P0686E09.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033012O14, full insert sequence.
FL= gb:AK073157.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4298011/11ribosomal protein L22 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42960OsAffx.11449.1.S1_at11/111+24787885..24791118TPR Domain containing protein, expressed
LOC_Os01g42970Os.1486.1.S1_s_at10/111+24798779..24805279expressed protein
LOC_Os01g42970Os.46377.1.S1_at10/111+24798779..24805279expressed protein
LOC_Os01g42980Os.1487.1.S1_at11/111+24807746..24810562ribosomal protein L22 family protein, putative, expressed
LOC_Os01g42980Os.1487.2.S1_x_at10/111+24807746..24810562ribosomal protein L22 family protein, putative, expressed
LOC_Os01g42990OsAffx.11451.4.S1_x_at11/111+24811397..24814679expressed protein
LOC_Os01g42990Os.33175.1.S1_at11/111+24811397..24814679expressed protein
LOC_Os01g42990OsAffx.11451.3.S1_x_at7/111+24811397..24814679expressed protein
LOC_Os01g42990OsAffx.11451.2.S1_x_at4/111+24811397..24814679expressed protein
LOC_Os01g43000OsAffx.11451.5.S1_x_at11/111+24815746..24818240transposon protein, putative, unclassified
LOC_Os01g43000OsAffx.11451.5.S1_at10/111+24815746..24818240transposon protein, putative, unclassified
LOC_Os01g43010OsAffx.26141.4.S1_at11/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.26141.4.S1_x_at9/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.26141.3.S1_x_at9/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010Os.57359.1.S1_at8/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.11451.3.S1_x_at1/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.11451.2.S1_x_at1/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43020Os.16523.1.S1_at11/111+24825687..24831704CTP synthase, putative, expressed
LOC_Os01g43020OsAffx.24925.1.S1_x_at1/111+24825687..24831704CTP synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1487.1.S1_at--371--8611Chr01:24810259..24810283 (25 bp)
TGGTGCTGCTGCGTAGCATGGCTTC
LOC_Os01g42980
Os.1487.1.S1_at--785--9051Chr01:24810268..24810292 (25 bp)
TGCGTAGCATGGCTTCCCATTTGCA
LOC_Os01g42980
Os.1487.1.S1_at--214--10651Chr01:24810281..24810305 (25 bp)
TTCCCATTTGCAGGATGTCTGCCTT
LOC_Os01g42980
Os.1487.1.S1_at--632--6271Chr01:24810294..24810318 (25 bp)
GATGTCTGCCTTCATTGGCCTTGAA
LOC_Os01g42980
Os.1487.1.S1_at--476--3611Chr01:24810306..24810330 (25 bp)
CATTGGCCTTGAAGCGGTGAGTAGC
LOC_Os01g42980
Os.1487.1.S1_at--702--5511Chr01:24810354..24810378 (25 bp)
GAACAATTGTAGCTCTCTCAAGAAT
LOC_Os01g42980
Os.1487.1.S1_at--681--1031Chr01:24810387..24810411 (25 bp)
AGGTCTCATTTGTCAGGCCTGTCTT
LOC_Os01g42980
Os.1487.1.S1_at--591--211Chr01:24810394..24810418 (25 bp)
ATTTGTCAGGCCTGTCTTTGTTCTG
LOC_Os01g42980
Os.1487.1.S1_at--1070--191Chr01:24810438..24810462 (25 bp)
ATTTGTCTCATGAAGCATAGGAAAC
LOC_Os01g42980
Os.1487.1.S1_at--1039--8151Chr01:24810457..24810481 (25 bp)
GGAAACTGTGGCATTGCCCACGATT
LOC_Os01g42980
Os.1487.1.S1_at--678--71Chr01:24810469..24810493 (25 bp)
ATTGCCCACGATTCTACTCAGAATG
LOC_Os01g42980
Target Sequence 
TGGTGCTGCTGCGTAGCATGGCTTCCCATTTGCAGGATGTCTGCCTTCATTGGCCTTGAAGCGGTGAGTAGCCGCATATN
CTGAAATTTACCCAAGAACAATTGTAGCTCTCTCAAGAATGAATTCAAAGGTCTCATTTGTCAGGCCTGTCTTTGTTCTG
TTTGTTTCATCTGTATGAAATTTGTCTCATGAAGCATAGGAAACTGTGGCATTGCCCACGATTCTACTCAGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis