Browse Element(s) Details


OsAffx.11451.2.S1_x_at

Description gb:NM_187727.1
DB_XREF= gi:34902539
GEN=OSJNBa0004B13.26
TID=OsAffx.11451.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0004B13.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1823010/11expressed protein
LOC_Os01g429904/11expressed protein
LOC_Os05g211403/11hypothetical protein
LOC_Os01g430101/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18200Os.45976.1.S1_x_at1/111+10181956..10185120transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18210Os.46041.1.S1_at10/111+10190421..10193450Peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed
LOC_Os01g18220Os.1723.1.S1_at11/111+10197255..10200250expressed protein
LOC_Os01g18230OsAffx.11451.3.S1_x_at11/111+10208169..10208966expressed protein
LOC_Os01g18230OsAffx.11451.2.S1_x_at10/111+10208169..10208966expressed protein
LOC_Os01g18230OsAffx.11451.4.S1_x_at3/111+10208169..10208966expressed protein
LOC_Os01g18240Os.1726.1.S1_at11/111+10214269..10216474Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g18250OsAffx.15843.1.S1_x_at2/111+10231711..10232801hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11451.2.S1_x_at--595--10152Chr01:24814081..24814105 (25 bp)
TATCGTAGTCTACGCTCATGACGAG
LOC_Os01g42990
OsAffx.11451.2.S1_x_at--1101--1152Chr01:24814087..24814111 (25 bp)
AGTCTACGCTCATGACGAGACGGCC
LOC_Os01g42990
OsAffx.11451.2.S1_x_at--214--411Chr01:10208646..10208670 (25 bp)
ATCAGGTTTGGATGCTCAGGTTGCT
LOC_Os01g18230
OsAffx.11451.2.S1_x_at--441--3472Chr05:12418109..12418195 (24 bp)
CAGGTTGCTGAGGTGCAAATCGCCA
LOC_Os05g21140
OsAffx.11451.2.S1_x_at--684--6671Chr01:10208564..10208651 (25 bp)
GTTGCTGAGGTGCAAATCGCCACGC
LOC_Os01g18230
OsAffx.11451.2.S1_x_at--1106--3831Chr01:10208560..10208647 (25 bp)
CTGAGGTGCAAATCGCCACGCCGCG
LOC_Os01g18230
OsAffx.11451.2.S1_x_at--188--6153Chr05:12418248..12418271 (24 bp)
GAGGTGCGCGCCTACGTCGTCTGCT
LOC_Os05g21140
OsAffx.11451.2.S1_x_at--1148--972Chr05:12418371..12418390 (20 bp)
AGGAGGCAGCACGTTTCGCCGTCGT
LOC_Os05g21140
OsAffx.11451.2.S1_x_at--52--8511Chr01:10208302..10208326 (25 bp)
TGGCATGCACCAAGGCGAGGGCCAC
LOC_Os01g18230
OsAffx.11451.2.S1_x_at--1162--4351Chr01:10208219..10208243 (25 bp)
CCACCCGGTGGCTGTGCTGCAGTGA
LOC_Os01g18230
OsAffx.11451.2.S1_x_at--655--4735Chr12:26764655..26764694 (25 bp)
GCTGTGCTGCAGTGAGAGAAAAGAA
NONE
Target Sequence 
TATCGTAGTCTACGCTCATGACGAGACGGCCATGTCGCCGGAGCAGGAGGATTGGGAGATCAATGGCATAGACAGATCAG
GTTTGGATGCTCAGGTTGCTGAGGTGCAAATCGCCACGCCGCGGACGCCCCGCCCCGCGCTGGTGCTCACGCCGGTCACC
GCCGACGAGGTGCGCGCCTACGTCGTCTGCTGCCGCAACCACGGCCTCACTGTCCGCGCGCGCAGCGGCGGGCACAACTA
CGAGGGCCTCTCGTACCGCTCGCTCCGGTCGTCCGGCGACGGCGAGGAGGCAGCACGTTTCGCCGTCGTCGACGTCGCCG
CGCTCTGGGTGGTGCGGCTGGACGCGGCGAGGGGAGTGGCATGCACCAAGGCGAGGGCCACGCGCGCCGTCCGCAGCGTC
GTCGCCGCCGGACTCCCGCCTCCCCCACCGATCTCCTCCCCACCCGGTGGCTGTGCTGCAGTGAGAGAAAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11451.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis