Browse Element(s) Details


OsAffx.11469.1.S1_at

Description tigr:9629.m04288
TID=OsAffx.11469.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4494010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44394Os.7481.1.S1_at11/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44394Os.56992.1.S1_at11/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44394Os.24693.1.A1_s_at1/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44430NANA1+25803592..25809821ZF-HD protein dimerisation region containing protein, expressed
LOC_Os01g44940OsAffx.11469.1.S1_at10/111+25822085..25823172hypothetical protein
LOC_Os01g44950OsAffx.2235.1.S1_at11/111+25825947..25827815AMP-binding enzyme family protein
LOC_Os01g44960Os.7269.1.S1_s_at11/111+25828749..25831240hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g44960Os.11119.1.S1_a_at1/111+25828749..25831240hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g44970Os.48563.1.S1_x_at11/111+25840794..25844926Polygalacturonase family protein, expressed
LOC_Os01g44970Os.48563.1.S1_s_at11/111+25840794..25844926Polygalacturonase family protein, expressed
LOC_Os01g44980OsAffx.23659.1.S1_at11/111+25847179..25850044peptide deformylase, putative
LOC_Os01g44980Os.27933.2.S1_s_at11/111+25847179..25850044peptide deformylase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11469.1.S1_at--496--10711Chr01:25823077..25823101 (25 bp)
TTGCTGCGTGCCACTACCATCAAAG
LOC_Os01g44940
OsAffx.11469.1.S1_at--58--4011Chr01:25823071..25823095 (25 bp)
CGTGCCACTACCATCAAAGGAGGTA
LOC_Os01g44940
OsAffx.11469.1.S1_at--930--3071Chr01:25823026..25823050 (25 bp)
AATCAGGAGAGCTACAGAGATGGAG
LOC_Os01g44940
OsAffx.11469.1.S1_at--710--8471Chr01:25822501..25822525 (25 bp)
TGGCGACAGCCCGATGAAGAGAAAG
LOC_Os01g44940
OsAffx.11469.1.S1_at--756--5491Chr01:25822459..25822483 (25 bp)
GAAACACGGTGGCAACCTGACGCAG
LOC_Os01g44940
OsAffx.11469.1.S1_at--968--2611Chr01:25822446..25822470 (25 bp)
AACCTGACGCAGGAGAGATCCTAGT
LOC_Os01g44940
OsAffx.11469.1.S1_at--416--1351Chr01:25822433..25822457 (25 bp)
AGAGATCCTAGTGGTCGACATTGAG
LOC_Os01g44940
OsAffx.11469.1.S1_at--655--10071Chr01:25822425..25822449 (25 bp)
TAGTGGTCGACATTGAGGTCACGGA
LOC_Os01g44940
OsAffx.11469.1.S1_at--772--8371Chr01:25822100..25822387 (25 bp)
GGCGTTCTTGCGAATGGAGACCTCT
LOC_Os01g44940
OsAffx.11469.1.S1_at--251--10711Chr01:25822093..25822380 (25 bp)
TTGCGAATGGAGACCTCTCCCGCGT
LOC_Os01g44940
OsAffx.11469.1.S1_at--820--5391NONE
GAAGCATGGTGGCAGCCCGGCAAAG
NONE
Target Sequence 
TTGCTGCGTGCCACTACCATCAAAGGAGGTAGATGCAGTGAAGAAGAGGGGAATCAGGAGAGCTACAGAGATGGAGAGGA
AAGCAAGCCGGCCGGTGGCTGGGGAGGAGGCCGCCGGGGATAGGCAGGAGAGGGGGAGGGCGACGCTACGACGGCGGCGG
TGGCGACAGCCCGATGAAGAGAAAGAGGCAGCCAAAGATGGGGAAACACGGTGGCAACCTGACGCAGGAGAGATCCTAGT
GGTCGACATTGAGGTCACGGAGGGACTTGACGATGGGGACGAGGTCGATGGCAATGGAGGCGTTCTTGCGAATGGAGACC
TCTCCCGCGTCGGGCTGAAGGGTGTCGATGGGGAGGCGCGGGCGTCGTGGGCGGCGGGAAGGCGCGGGCATCGACGGGGC
GAGGCGGGAAAAAAGGAGGACGGCGCCGTGATGGCCGGCTGTGGGGAAGCATGGTGGCAGCCCGGCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis