Browse Element(s) Details


OsAffx.11477.1.S1_at

Description tigr:9629.m04337
TID=OsAffx.11477.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ubiquitin family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4540011/11ubiquitin family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45340NANA1+26068882..26069310hypothetical protein
LOC_Os01g45350Os.34863.1.S1_at7/111+26072100..26074651limonene cyclase like protein, putative, expressed
LOC_Os01g45350OsAffx.27499.3.S1_x_at1/111+26072100..26074651limonene cyclase like protein, putative, expressed
LOC_Os01g45360Os.45985.1.S1_at10/111+26075057..26077312expressed protein
LOC_Os01g45370Os.35811.1.S1_at11/111+26079146..26082617radical SAM enzyme, Cfr family protein, expressed
LOC_Os01g45380Os.30916.1.S1_at11/111+26084643..26089035protein kinase, putative, expressed
LOC_Os01g45390OsAffx.2237.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_s_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45400OsAffx.11477.1.S1_x_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45400OsAffx.11477.1.S1_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45410OsAffx.11478.1.S1_at9/111+26095471..26095944hypothetical protein
LOC_Os01g45420OsAffx.11479.1.S1_at11/111+26098440..26098898ubiquitin family protein, putative, expressed
LOC_Os01g45430OsAffx.2238.1.S1_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45430Os.17986.1.S1_s_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45439Os.5202.1.S1_at11/111+26104446..26109149expressed protein
LOC_Os01g45439OsAffx.9248.1.S1_at4/111+26104446..26109149expressed protein
LOC_Os01g45450OsAffx.9247.1.S1_at11/111+26115550..26117836ATPase, AAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0010224biological_processresponse to UV-B
GO:0045116biological_processprotein neddylation
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11477.1.S1_at--913--5631Chr01:26094078..26094102 (25 bp)
GACACGATCCAGAACGTCAAGGCGA
LOC_Os01g45400
OsAffx.11477.1.S1_at--78--4051Chr01:26094082..26094106 (25 bp)
CGATCCAGAACGTCAAGGCGAAGGT
LOC_Os01g45400
OsAffx.11477.1.S1_at--195--9211Chr01:26094085..26094109 (25 bp)
TCCAGAACGTCAAGGCGAAGGTGCA
LOC_Os01g45400
OsAffx.11477.1.S1_at--768--1891Chr01:26094091..26094115 (25 bp)
ACGTCAAGGCGAAGGTGCAGGACAA
LOC_Os01g45400
OsAffx.11477.1.S1_at--1075--9291Chr01:26094235..26094259 (25 bp)
TCCGCGGCGGCCTGAACGTCAAGGT
LOC_Os01g45400
OsAffx.11477.1.S1_at--567--8971Chr01:26094247..26094271 (25 bp)
TGAACGTCAAGGTGAGGACGCTCAC
LOC_Os01g45400
OsAffx.11477.1.S1_at--215--9731Chr01:26094253..26094277 (25 bp)
TCAAGGTGAGGACGCTCACCGGCAA
LOC_Os01g45400
OsAffx.11477.1.S1_at--389--8931Chr01:26094301..26094325 (25 bp)
TGACGGACACGGTGGACAGGATCAA
LOC_Os01g45400
OsAffx.11477.1.S1_at--69--1411Chr01:26094406..26094430 (25 bp)
AGACGGCGCACGACTACAAGATCGA
LOC_Os01g45400
OsAffx.11477.1.S1_at--785--8391Chr01:26094410..26094434 (25 bp)
GGCGCACGACTACAAGATCGAGGCT
LOC_Os01g45400
OsAffx.11477.1.S1_at--981--5091Chr01:26094413..26094437 (25 bp)
GCACGACTACAAGATCGAGGCTGGC
LOC_Os01g45400
Target Sequence 
GACACGATCCAGAACGTCAAGGCGAAGGTGCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGGCTCATCTTCGCCGG
CAAGCAGCTGGAGGACGGGCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTCC
GCGGCGGCCTGAACGTCAAGGTGAGGACGCTCACCGGCAAGGAGATCGACATCGACATCGAGATGACGGACACGGTGGAC
AGGATCAAGGAGCGCGTCGAGGAGAGGGAGGGCATCCCGCCCGTGCAGCAGAGGCTCATCTACGGCGGGAAGCAGCTTGC
CGACGACAAGACGGCGCACGACTACAAGATCGAGGCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis