Browse Element(s) Details


OsAffx.11478.1.S1_at

Description gb:NM_192271.1
DB_XREF= gi:34911625
GEN=P0039G05.15
TID=OsAffx.11478.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0039G05.15 (P0039G05.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g454109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45350Os.34863.1.S1_at7/111+26072100..26074651limonene cyclase like protein, putative, expressed
LOC_Os01g45350OsAffx.27499.3.S1_x_at1/111+26072100..26074651limonene cyclase like protein, putative, expressed
LOC_Os01g45360Os.45985.1.S1_at10/111+26075057..26077312expressed protein
LOC_Os01g45370Os.35811.1.S1_at11/111+26079146..26082617radical SAM enzyme, Cfr family protein, expressed
LOC_Os01g45380Os.30916.1.S1_at11/111+26084643..26089035protein kinase, putative, expressed
LOC_Os01g45390OsAffx.2237.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_s_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45400OsAffx.11477.1.S1_x_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45400OsAffx.11477.1.S1_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45410OsAffx.11478.1.S1_at9/111+26095471..26095944hypothetical protein
LOC_Os01g45420OsAffx.11479.1.S1_at11/111+26098440..26098898ubiquitin family protein, putative, expressed
LOC_Os01g45430OsAffx.2238.1.S1_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45430Os.17986.1.S1_s_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45439Os.5202.1.S1_at11/111+26104446..26109149expressed protein
LOC_Os01g45439OsAffx.9248.1.S1_at4/111+26104446..26109149expressed protein
LOC_Os01g45450OsAffx.9247.1.S1_at11/111+26115550..26117836ATPase, AAA family protein, expressed
LOC_Os01g45460Os.28909.1.S1_at11/111+26119547..26124462Carboxylesterase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11478.1.S1_at--6--3951Chr01:26095371..26095479 (25 bp)
CGGCAACTCGGCAAGGATGACGATC
NONE
OsAffx.11478.1.S1_at--783--3211Chr01:26095470..26095490 (21 bp)
CAAGGATGACGATCATGGTGGACAA
NONE
OsAffx.11478.1.S1_at--124--3511Chr01:26095550..26095574 (25 bp)
CATGGTGGACTAGGCCAGCTGCGGC
LOC_Os01g45410
OsAffx.11478.1.S1_at--39--3751Chr01:26095599..26095623 (25 bp)
CTCAGTGGAGTGTAACGGCGGCCAT
LOC_Os01g45410
OsAffx.11478.1.S1_at--519--4091Chr01:26095657..26095681 (25 bp)
CGACGAACAAGGACGGCGACTCAGT
LOC_Os01g45410
OsAffx.11478.1.S1_at--31--5752Chr06:25851020..25851502 (25 bp)
GACGGCAATGGAGAGCGATGGCAAC
NONE
OsAffx.11478.1.S1_at--1162--7511Chr01:26095809..26095833 (25 bp)
GTGGACACAGTCAACAGCGTACCGG
LOC_Os01g45410
OsAffx.11478.1.S1_at--910--2151Chr01:26095822..26095846 (25 bp)
ACAGCGTACCGGACGCAGATGGCGA
LOC_Os01g45410
OsAffx.11478.1.S1_at--801--6971Chr01:26095827..26095851 (25 bp)
GTACCGGACGCAGATGGCGAACCCA
LOC_Os01g45410
OsAffx.11478.1.S1_at--82--5051Chr01:26095836..26095860 (25 bp)
GCAGATGGCGAACCCATCGCTCCTG
LOC_Os01g45410
OsAffx.11478.1.S1_at--635--3371Chr01:26095890..26095914 (25 bp)
CAGCCGGACGGCTAAGGGCAAGTAC
LOC_Os01g45410
Target Sequence 
CGGCAACTCGGCAAGGATGACGATCATGGTGGACAAGGACGGTGGCGGCGGTGGTGACAGACGAGGGTGGCGACCCAGTG
GAGTGCGATGGCGGGCATGGTGGACTAGGCCAGCTGCGGCGACGACGATGGACGAGGACGGCGACTCAGTGGAGTGTAAC
GGCGGCCATGGTGGTGACGGACGAGGCCGCTGGCAGCCGCAACGACGAACAAGGACGGCGACTCAGTGGAGTGCAACGGC
TGCGGTGACGGACAAGGCTGCTGATGGTGGCGGCGCTGGCAATGACGACGGACGAGGGCGGCGACCCGGTGAAGCGCGAG
ACGACGACGGCAATGGAGAGCGATGGCAACGGTGGTGGACACAGTCAACAGCGTACCGGACGCAGATGGCGAACCCATCG
CTCCTGGTGGTCCCCGCGACCTCGGGCCGAGCGTGCAGCCGGACGGCTAAGGGCAAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis