Browse Element(s) Details


OsAffx.11514.1.S1_x_at

Description gb:NM_191968.1
DB_XREF= gi:34911019
GEN=OJ1125_C04.15
TID=OsAffx.11514.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1125_C04.15 (OJ1125_C04.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4814011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48100OsAffx.11513.1.S1_at11/111+27867816..27868313hypothetical protein
LOC_Os01g48110OsAffx.23705.1.S1_at11/111+27869266..27869800hypothetical protein
LOC_Os01g48120OsAffx.23706.1.S1_at11/111+27873667..27875087hypothetical protein
LOC_Os01g48130Os.9851.1.S1_at11/111+27882875..27887529no apical meristem, putative, expressed
LOC_Os01g48140OsAffx.11514.1.S1_x_at11/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48140OsAffx.11514.1.S1_at11/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48140OsAffx.11514.2.S1_at9/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48150NANA1+27898052..27898793expressed protein
LOC_Os01g48160OsAffx.23708.1.S1_at10/111+27904659..27905296hypothetical protein
LOC_Os01g48170NANA1+27908996..27909977Homeobox domain containing protein
LOC_Os01g48180Os.15936.2.S1_x_at11/111+27914225..27925679DDT domain containing protein, expressed
LOC_Os01g48180Os.15936.1.S1_at11/111+27914225..27925679DDT domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11514.1.S1_x_at--596--1231Chr01:27896355..27896379 (25 bp)
AGTTCTGTTATTGATGGGCTCTGTA
LOC_Os01g48140
OsAffx.11514.1.S1_x_at--331--3871Chr01:27896323..27896347 (25 bp)
CTGTCTGGGTCAGGCCATGGAGATT
LOC_Os01g48140
OsAffx.11514.1.S1_x_at--1131--6511Chr01:27896302..27896326 (25 bp)
GATTTTAGACCGGATGCGTCTCCAG
LOC_Os01g48140
OsAffx.11514.1.S1_x_at--1042--3751Chr01:27896261..27896285 (25 bp)
CTGGGTTGTTCGGTAAGCTAATTGT
LOC_Os01g48140
OsAffx.11514.1.S1_x_at--567--3171Chr01:27896242..27896266 (25 bp)
AATTGTTGGGCTATGTGATGCAGGA
LOC_Os01g48140
OsAffx.11514.1.S1_x_at--988--651Chr01:27896184..27896208 (25 bp)
ATGAATTTTGCTGGCATCCGACCAA
LOC_Os01g48140
OsAffx.11514.1.S1_x_at--580--2371Chr01:27896161..27896185 (25 bp)
AAACCGCTTGACTTGGAGCCTGCAT
LOC_Os01g48140
OsAffx.11514.1.S1_x_at--394--6731Chr01:27896085..27896109 (25 bp)
GTAAGGGCTTTTCAGGTGTACCAGA
LOC_Os01g48140
OsAffx.11514.1.S1_x_at--779--1351Chr01:27896063..27896087 (25 bp)
AGAGCATGCGTACCCGTGGAATTTC
LOC_Os01g48140
OsAffx.11514.1.S1_x_at--619--471Chr01:27896018..27896042 (25 bp)
ATCTCCTTGTCGAGTGCTTATCGAA
LOC_Os01g48140
OsAffx.11514.1.S1_x_at--396--2351Chr01:27895977..27896001 (25 bp)
AAAGCTGCTCATGTTGTGCGTGACA
LOC_Os01g48140
Target Sequence 
AGTTCTGTTATTGATGGGCTCTGTAAGGAGGGCTGTCTGGGTCAGGCCATGGAGATTTTAGACCGGATGCGTCTCCAGGG
GAGGAAGCCTGATGCTGGGTTGTTCGGTAAGCTAATTGTTGGGCTATGTGATGCAGGAAGGGCTTTGGAGGCTTCAAATT
ACCTCGATGAGATGAATTTTGCTGGCATCCGACCAAACCGCTTGACTTGGAGCCTGCATGGCAGGATAAATGATGCAGTG
GTGACAGCACTGTGTTCTAAGGGTGAAGTTGTAAGGGCTTTTCAGGTGTACCAGAGCATGCGTACCCGTGGAATTTCTAC
CAAGCCAACAACTTTCCATCTCCTTGTCGAGTGCTTATCGAAAAAGAACAATTTAGAGAAAGCTGCTCATGTTGTGCGTG
ACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11514.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis