Browse Element(s) Details


OsAffx.11523.1.S1_at

Description tigr:9629.m04710
TID=OsAffx.11523.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4884011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48810Os.38817.1.S1_at11/111+28335879..28338709expressed protein
LOC_Os01g48810Os.38817.2.S1_x_at9/111+28335879..28338709expressed protein
LOC_Os01g48810Os.52100.1.S1_at1/111+28335879..28338709expressed protein
LOC_Os01g48820Os.21192.2.S1_at10/111+28339527..28340797expressed protein
LOC_Os01g48820Os.21192.3.S1_x_at9/111+28339527..28340797expressed protein
LOC_Os01g48830Os.31693.2.S1_at11/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.4.S1_x_at10/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.3.S1_at9/111+28343118..28348261expressed protein
LOC_Os01g48840OsAffx.11523.1.S1_at11/111+28354377..28355274hypothetical protein
LOC_Os01g48850Os.34998.1.S1_x_at10/111+28355641..28358553auxin-responsive protein, putative, expressed
LOC_Os01g48874Os.27632.1.S1_at10/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48874OsAffx.2276.1.S1_at9/111+28359713..28378674condensation domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11523.1.S1_at--866--9371Chr01:28354627..28354651 (25 bp)
TCGTATATAGCTCTAACACCGCCAC
LOC_Os01g48840
OsAffx.11523.1.S1_at--351--7211Chr01:28354518..28354542 (25 bp)
GTCGTTCCCGTACTTGTCACCACTG
LOC_Os01g48840
OsAffx.11523.1.S1_at--38--7011Chr01:28354509..28354533 (25 bp)
GTACTTGTCACCACTGCAGTGCGAG
LOC_Os01g48840
OsAffx.11523.1.S1_at--1036--1952Chr08:22030268..22030290 (23 bp)
ACTGCAGTGCGAGGGCCACACCGAT
NONE
OsAffx.11523.1.S1_at--230--9151Chr01:28354490..28354514 (25 bp)
TGCGAGGGCCACACCGATGCCAGTG
LOC_Os01g48840
OsAffx.11523.1.S1_at--342--3311Chr01:28354459..28354483 (25 bp)
CACACACCGTGCTTGCAGGCGAGCA
LOC_Os01g48840
OsAffx.11523.1.S1_at--588--10711Chr01:28354447..28354471 (25 bp)
TTGCAGGCGAGCACGACGTTAACCA
LOC_Os01g48840
OsAffx.11523.1.S1_at--474--5751Chr01:28354433..28354457 (25 bp)
GACGTTAACCACTTCCTATTTCATG
LOC_Os01g48840
OsAffx.11523.1.S1_at--8--9811Chr01:28354428..28354452 (25 bp)
TAACCACTTCCTATTTCATGTCGAG
LOC_Os01g48840
OsAffx.11523.1.S1_at--312--4371Chr01:28354425..28354449 (25 bp)
CCACTTCCTATTTCATGTCGAGCAG
LOC_Os01g48840
OsAffx.11523.1.S1_at--194--9371Chr01:28354408..28354432 (25 bp)
TCGAGCAGGGCCTCACGGAGCGCAT
LOC_Os01g48840
Target Sequence 
TCGTATATAGCTCTAACACCGCCACCGCACCCACTGTCGCCGCCATCATCGGTGAGGCGGCTCTCTGGGGGTTTGAGGGT
GGCCCACGCGTCTTGGCCCGTGGCTCCGCGTCGTTCCCGTACTTGTCACCACTGCAGTGCGAGGGCCACACCGATGCCAG
TGCTCCGCCACACACCGTGCTTGCAGGCGAGCACGACGTTAACCACTTCCTATTTCATGTCGAGCAGGGCCTCACGGAGC
GCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis