Browse Element(s) Details


OsAffx.11532.1.S1_at

Description tigr:9629.m04787
TID=OsAffx.11532.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4955010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49500Os.37083.2.S1_at1/111+28803760..28804086retrotransposon protein, putative, unclassified
LOC_Os01g49510Os.15758.1.S1_a_at11/111+28806125..28809660expressed protein
LOC_Os01g49529Os.41662.1.S1_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.1.S1_s_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.5.S1_x_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.41662.1.S1_x_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.4.S1_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.5.S1_s_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.2.S1_x_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.11986.3.S1_x_at1/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49550OsAffx.11532.1.S1_at10/111+28825470..28827934hypothetical protein
LOC_Os01g49560OsAffx.21488.1.S1_at11/111+28829211..28830102hypothetical protein
LOC_Os01g49570NANA1+28836103..28836420hypothetical protein
LOC_Os01g49580Os.11986.3.S1_x_at6/111+28839944..28841121expressed protein
LOC_Os01g49580Os.11986.3.S1_at4/111+28839944..28841121expressed protein
LOC_Os01g49580Os.27097.1.A1_at2/111+28839944..28841121expressed protein
LOC_Os01g49580Os.27097.1.A1_x_at1/111+28839944..28841121expressed protein
LOC_Os01g49590OsAffx.11534.2.S1_at11/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590Os.11986.2.S1_x_at11/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590OsAffx.11534.1.S1_x_at7/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590Os.11986.1.S1_at2/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590OsAffx.24523.1.S1_at1/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49600OsAffx.21488.1.S1_at11/111+28849330..28850221hypothetical protein
LOC_Os01g49614Os.11986.1.S1_at11/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614OsAffx.11534.1.S1_x_at11/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.11986.3.S1_x_at11/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.11986.3.S1_at11/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.41662.1.S1_x_at9/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614OsAffx.32334.1.S1_s_at7/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614OsAffx.32334.1.S1_x_at6/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614OsAffx.32238.1.A1_at5/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.11986.2.S1_x_at4/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.41662.1.S1_at3/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.27097.1.A1_at2/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.27097.1.A1_x_at1/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.19294.1.S1_at1/111+28850853..28861236Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11532.1.S1_at--114--4171Chr01:28825521..28825545 (25 bp)
CCCACCTGTTACATAACTCTACAAT
LOC_Os01g49550
OsAffx.11532.1.S1_at--218--6771Chr01:28825528..28825552 (25 bp)
GTTACATAACTCTACAATGGTCGTC
LOC_Os01g49550
OsAffx.11532.1.S1_at--1072--2531Chr01:28825535..28825559 (25 bp)
AACTCTACAATGGTCGTCAACTCGT
LOC_Os01g49550
OsAffx.11532.1.S1_at--18--9531Chr01:28825538..28825562 (25 bp)
TCTACAATGGTCGTCAACTCGTCGT
LOC_Os01g49550
OsAffx.11532.1.S1_at--183--9831Chr01:28825540..28825564 (25 bp)
TACAATGGTCGTCAACTCGTCGTCA
LOC_Os01g49550
OsAffx.11532.1.S1_at--687--2971Chr01:28825543..28825567 (25 bp)
AATGGTCGTCAACTCGTCGTCACCA
LOC_Os01g49550
OsAffx.11532.1.S1_at--95--9411Chr01:28825548..28825572 (25 bp)
TCGTCAACTCGTCGTCACCAAGAAG
LOC_Os01g49550
OsAffx.11532.1.S1_at--54--3371NONE
CACCAAGAAGGCGGTTACCGCGCGA
NONE
OsAffx.11532.1.S1_at--475--6751Chr01:28826557..28826581 (25 bp)
GTTACCGCGCGATTACCGCCGTTAT
LOC_Os01g49550
OsAffx.11532.1.S1_at--727--9931Chr01:28826559..28826583 (25 bp)
TACCGCGCGATTACCGCCGTTATCG
LOC_Os01g49550
OsAffx.11532.1.S1_at--834--8351Chr01:28826597..28826621 (25 bp)
TGGCAGTAACCCCGGTCCAAACGAT
LOC_Os01g49550
Target Sequence 
CCCACCTGTTACATAACTCTACAATGGTCGTCAACTCGTCGTCACCAAGAAGGCGGTTACCGCGCGATTACCGCCGTTAT
CGCGCTACCGCGGGGTGGCAGTAACCCCGGTCCAAACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis