Browse Element(s) Details


OsAffx.11536.1.S1_at

Description tigr:9629.m04813
TID=OsAffx.11536.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4980011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49730Os.57153.1.S1_at11/111+28898884..28899768expressed protein
LOC_Os01g49740Os.28814.1.S1_at11/111+28899980..28902522expressed protein
LOC_Os01g49740Os.28814.2.S1_x_at11/111+28899980..28902522expressed protein
LOC_Os01g49750Os.29043.1.S1_at11/111+28902662..28903521expressed protein
LOC_Os01g49760Os.33553.2.S1_x_at11/111+28904947..28910543expressed protein
LOC_Os01g49760Os.33553.1.S1_at11/111+28904947..28910543expressed protein
LOC_Os01g49770Os.7556.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.45918.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.7556.1.S1_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49780NANA1+28916796..28917296hypothetical protein
LOC_Os01g49790NANA1+28921794..28922069hypothetical protein
LOC_Os01g49800OsAffx.11536.1.S1_at11/111+28923828..28924902hypothetical protein
LOC_Os01g49810OsAffx.23731.1.S1_at11/111+28926142..28927092hypothetical protein
LOC_Os01g49820Os.41653.1.S1_x_at11/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.41653.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.20321.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49830Os.8019.1.S1_at11/111+28946388..28947953DNA-binding protein RAV1, putative, expressed
LOC_Os01g49840OsAffx.23732.1.S1_at11/111+28949350..28949637hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11536.1.S1_at--426--7151Chr01:28924291..28924315 (25 bp)
GTCTATACTACTATTTTGCCACGGT
LOC_Os01g49800
OsAffx.11536.1.S1_at--1074--9191Chr01:28924307..28924331 (25 bp)
TGCCACGGTTTGTTATAGTTTTCTC
LOC_Os01g49800
OsAffx.11536.1.S1_at--745--10051Chr01:28924322..28924346 (25 bp)
TAGTTTTCTCCACGAGACAAGGCGT
LOC_Os01g49800
OsAffx.11536.1.S1_at--329--271Chr01:28924351..28924375 (25 bp)
ATAGGTGGACGCAAACACACCCCTG
LOC_Os01g49800
OsAffx.11536.1.S1_at--937--6191Chr01:28924523..28924547 (25 bp)
GAGGCAACAACGTCGATGATCCCCT
LOC_Os01g49800
OsAffx.11536.1.S1_at--602--8591Chr01:28924640..28924664 (25 bp)
TGGTCATCCCCACATTGTCTCATTT
LOC_Os01g49800
OsAffx.11536.1.S1_at--368--211Chr01:28924661..28924685 (25 bp)
ATTTGCCGACGCAGCTAGTGGTCTC
LOC_Os01g49800
OsAffx.11536.1.S1_at--96--10671Chr01:28924725..28924749 (25 bp)
TTCCTCATTATCACAGGTGCCACAA
LOC_Os01g49800
OsAffx.11536.1.S1_at--730--4811Chr01:28924761..28924785 (25 bp)
GCTCTCTGTACTAGCTCAAGTTCTT
LOC_Os01g49800
OsAffx.11536.1.S1_at--1092--931Chr01:28924799..28924823 (25 bp)
AGGAATCACCTCACTGTGTCACTGG
LOC_Os01g49800
OsAffx.11536.1.S1_at--65--7451Chr01:28924814..28924838 (25 bp)
GTGTCACTGGCACTAAGAACCACGT
LOC_Os01g49800
Target Sequence 
GTCTATACTACTATTTTGCCACGGTTTGTTATAGTTTTCTCCACGAGACAAGGCGTGACCATAGGTGGACGCAAACACAC
CCCTGCTACTTCTGTGGGGTTAAGGCAGCAAGCGGAACAACAAGAGAAGGGATGCCATGGAGGCAACAACGTCGATGATC
CCCTCTCCCTCGGATCCATCTACTCCAGCGTCCCCACGCCACCTCTCTCACTGTCCCTATTCGTGGACCCCGCGCTGCTT
CCCTCGCCAACGCCAGTGGTCATCCCCACATTGTCTCATTTGCCGACGCAGCTAGTGGTCTCCTCCACGCAGCCTCACTT
CATCATCATCCCCGCTCTCTCTTCCTCATTATCACAGGTGCCACAACCTCCTTCCCCGCTCTCTGTACTAGCTCAAGTTC
TTATGTATGAATACCAGGAATCACCTCACTGTGTCACTGGCACTAAGAACCACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis