Browse Element(s) Details


OsAffx.1158.1.S1_at

Description gb:NM_189439.1
DB_XREF= gi:34905961
GEN=OJ1656_A11.22
TID=OsAffx.1158.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1656_A11.22 (OJ1656_A11.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g353101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35254OsAffx.23519.1.S1_at11/111+19843603..19849337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35254Os.14491.2.S1_x_at5/111+19843603..19849337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35254Os.47463.1.S1_x_at4/111+19843603..19849337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35254OsAffx.11334.1.S1_at1/111+19843603..19849337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35270NANA1+19853690..19855895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35280NANA1+19857412..19860744transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35290OsAffx.30226.2.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35290OsAffx.442.1.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35290Os.46785.2.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35300OsAffx.11334.1.S1_at11/111+19866217..19867136Rp3 protein, putative
LOC_Os01g35310OsAffx.11335.1.S1_at11/111+19869284..19871103hypothetical protein
LOC_Os01g35310OsAffx.1158.1.S1_at1/111+19869284..19871103hypothetical protein
LOC_Os01g35320NANA1+19874147..19874975hypothetical protein
LOC_Os01g35330Os.46604.1.S1_s_at11/111+19876035..19876948expressed protein
LOC_Os01g35330Os.46431.1.S1_at10/111+19876035..19876948expressed protein
LOC_Os01g35340OsAffx.21272.1.S1_x_at11/111+19878442..19878675hypothetical protein
LOC_Os01g35360NANA1+19887181..19888530retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35370Os.40360.1.S1_x_at1/111+19894933..19895958hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1158.1.S1_at--58--7916Chr06:7609703..7609727 (25 bp)
GGTTGCCGCCGAATCTTGCCGGAGA
NONE
OsAffx.1158.1.S1_at--824--10696Chr06:7609705..7609729 (25 bp)
TTGCCGCCGAATCTTGCCGGAGAAG
NONE
OsAffx.1158.1.S1_at--139--100514Chr12:23155267..23155291 (25 bp)
TAGGGGTAGTTCAATGGCATTTCTG
NONE
OsAffx.1158.1.S1_at--466--7033Chr11:5990423..5990446 (24 bp)
GTACAAATTTATGGAGCTGCTCTGC
NONE
OsAffx.1158.1.S1_at--6--2254Chr03:31777202..31777305 (25 bp)
AAATTTATGGAGCTGCTCTGCCAAC
NONE
OsAffx.1158.1.S1_at--118--193Chr03:31777204..31777307 (25 bp)
ATTTATGGAGCTGCTCTGCCAACTC
NONE
OsAffx.1158.1.S1_at--1149--839Chr07:29385908..29385931 (24 bp)
ATGGAGCTGCTCTGCCAACTCCGCT
NONE
OsAffx.1158.1.S1_at--558--2138Chr12:23155422..23155446 (25 bp)
ACAGAGAATTTGTACCGTTTGGCAC
NONE
OsAffx.1158.1.S1_at--939--1356Chr12:23155424..23155448 (25 bp)
AGAGAATTTGTACCGTTTGGCACAG
NONE
OsAffx.1158.1.S1_at--41--33921Chr12:23155446..23155470 (25 bp)
CAGCTCCAGCTCTAGGTAAGTTGGA
NONE
OsAffx.1158.1.S1_at--598--43524Chr12:23155451..23155475 (25 bp)
CCAGCTCTAGGTAAGTTGGAGTTGG
NONE
Target Sequence 
GGTTGCCGCCGAATCTTGCCGGAGAAGATGGGAGAGGAGAGAGAGGATGGGAGGAGGAGTTTAGGGGTAGTTCAATGGCA
TTTCTGTGTAAATACATCAAAATTTTAAAGGGTAGTGGGTCTTTTGGGGTGGAGTGGAGCTCTGGAGCAGCAAAAACCCA
GCTCCACCCCCGTAGTACAAATTTATGGAGCTGCTCTGCCAACTCCGCTCCAAAAAACAGAGAATTTGTACCGTTTGGCA
CAGCTCCAGCTCTAGGTAAGTTGGAGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis