Browse Element(s) Details


OsAffx.11581.1.S1_at

Description tigr:9629.m05164
TID=OsAffx.11581.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5312011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53090Os.37745.1.S1_at11/111+30839129..30840475Pathogen-related protein, putative, expressed
LOC_Os01g53100OsAffx.25766.2.S1_x_at10/111+30843679..30844278Ubiquitin family protein, expressed
LOC_Os01g53100OsAffx.25766.2.S1_at10/111+30843679..30844278Ubiquitin family protein, expressed
LOC_Os01g53110Os.37745.1.S1_at2/111+30847448..30848413Pathogen-related protein, putative
LOC_Os01g53120OsAffx.11581.1.S1_at11/111+30851804..30852380hypothetical protein
LOC_Os01g53130Os.41794.1.S1_at10/111+30852233..30855907Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53140Os.6679.1.S1_at10/111+30860457..30863593expressed protein
LOC_Os01g53140Os.8190.2.S1_x_at2/111+30860457..30863593expressed protein
LOC_Os01g53150Os.18863.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.52504.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.49481.1.S1_at1/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53160Os.55598.1.S1_at11/111+30869648..30870902uncharacterized plant-specific domain TIGR01568 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11581.1.S1_at--709--3871Chr01:30851834..30852279 (25 bp)
CTGTCCAAGCTCGTCCAAGTGTTAC
LOC_Os01g53120
OsAffx.11581.1.S1_at--1101--2671Chr01:30851840..30852285 (25 bp)
AAGCTCGTCCAAGTGTTACGGCGAC
LOC_Os01g53120
OsAffx.11581.1.S1_at--261--9411Chr01:30851844..30852289 (25 bp)
TCGTCCAAGTGTTACGGCGACATGA
LOC_Os01g53120
OsAffx.11581.1.S1_at--964--7391Chr01:30852273..30852297 (25 bp)
GTGTTACGGCGACATGAAACTGTAC
LOC_Os01g53120
OsAffx.11581.1.S1_at--465--9931Chr01:30852277..30852301 (25 bp)
TACGGCGACATGAAACTGTACTACA
LOC_Os01g53120
OsAffx.11581.1.S1_at--700--8371Chr01:30852280..30852304 (25 bp)
GGCGACATGAAACTGTACTACAAAA
LOC_Os01g53120
OsAffx.11581.1.S1_at--272--2411Chr01:30852303..30852327 (25 bp)
AAACAAATGGTAGTTGATTGCTCTC
LOC_Os01g53120
OsAffx.11581.1.S1_at--333--6951Chr01:30852312..30852336 (25 bp)
GTAGTTGATTGCTCTCATACCATCC
LOC_Os01g53120
OsAffx.11581.1.S1_at--57--1251Chr01:30852314..30852338 (25 bp)
AGTTGATTGCTCTCATACCATCCAA
LOC_Os01g53120
OsAffx.11581.1.S1_at--323--8831Chr01:30852317..30852341 (25 bp)
TGATTGCTCTCATACCATCCAACCA
LOC_Os01g53120
OsAffx.11581.1.S1_at--1072--9591Chr01:30852326..30852350 (25 bp)
TCATACCATCCAACCACCATTGGAT
LOC_Os01g53120
Target Sequence 
CTGTCCAAGCTCGTCCAAGTGTTACGGCGACATGAAACTGTACTACAAAAACAAATGGTAGTTGATTGCTCTCATACCAT
CCAACCACCATTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis