Browse Element(s) Details


OsAffx.11599.1.S1_at

Description tigr:9629.m05292
TID=OsAffx.11599.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5428011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54240Os.34156.1.S1_a_at10/111+31530293..31538120Nup85 Nucleoporin family protein, expressed
LOC_Os01g54250OsAffx.20380.1.S1_x_at11/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54250OsAffx.20380.1.S1_at11/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54250OsAffx.22711.4.A1_x_at1/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54250OsAffx.22927.1.S1_x_at1/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54260OsAffx.21171.3.S1_x_at1/111+31544522..31546033retrotransposon protein, putative, unclassified
LOC_Os01g54270OsAffx.9447.1.S1_x_at11/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270OsAffx.9447.1.S1_at11/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270Os.10731.1.A1_a_at2/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270OsAffx.20729.1.S1_x_at1/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270Os.38764.1.S1_x_at1/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54280OsAffx.11599.1.S1_at11/111+31556935..31557291hypothetical protein
LOC_Os01g54290NANA1+31561363..31565748retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g54300Os.2123.1.S1_at11/111+31579722..31581752glycosyl hydrolase family 5 protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11599.1.S1_at--666--5291Chr01:31557219..31557243 (25 bp)
GAAGGCATCAATCTAGCTCTACAAT
LOC_Os01g54280
OsAffx.11599.1.S1_at--536--451Chr01:31557209..31557233 (25 bp)
ATCTAGCTCTACAATGGGCTCTGCT
LOC_Os01g54280
OsAffx.11599.1.S1_at--963--4771Chr01:31557187..31557211 (25 bp)
GCTGCCGCTCATTATGGAGTCGGAT
LOC_Os01g54280
OsAffx.11599.1.S1_at--992--6091Chr01:31557171..31557195 (25 bp)
GAGTCGGATTGTTTGGTCGCTATCA
LOC_Os01g54280
OsAffx.11599.1.S1_at--195--3111Chr01:31557147..31557171 (25 bp)
AATATGATCCAGTCACCAGGGAGGG
LOC_Os01g54280
OsAffx.11599.1.S1_at--1123--1331Chr01:31557066..31557090 (25 bp)
AGAGTGGTCAGCATTCAGAAAGTTC
LOC_Os01g54280
OsAffx.11599.1.S1_at--609--5571Chr01:31557049..31557073 (25 bp)
GAAAGTTCAGCGATGCCAGAATAAC
LOC_Os01g54280
OsAffx.11599.1.S1_at--565--3671Chr01:31557016..31557040 (25 bp)
CTTTTTAGCTAATAGAGGCCGCACT
LOC_Os01g54280
OsAffx.11599.1.S1_at--588--891Chr01:31557001..31557025 (25 bp)
AGGCCGCACTAATTTTCTTTCTGAG
LOC_Os01g54280
OsAffx.11599.1.S1_at--55--6071Chr01:31556979..31557003 (25 bp)
GAGTTCTGGCCAGATGGCTCTTGTA
LOC_Os01g54280
OsAffx.11599.1.S1_at--185--8491Chr01:31556965..31556989 (25 bp)
TGGCTCTTGTAATCTCATTTCACAG
LOC_Os01g54280
Target Sequence 
GAAGGCATCAATCTAGCTCTACAATGGGCTCTGCTGCCGCTCATTATGGAGTCGGATTGTTTGGTCGCTATCAATATGAT
CCAGTCACCAGGGAGGGAGATGTCCCAGCTTGCTTACCTTGTCAGGGACATAGAAGAGCTGCTGGCAGGCGATAGAGTGG
TCAGCATTCAGAAAGTTCAGCGATGCCAGAATAACATAAGCCACTTTTTAGCTAATAGAGGCCGCACTAATTTTCTTTCT
GAGTTCTGGCCAGATGGCTCTTGTAATCTCATTTCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis