Browse Element(s) Details


OsAffx.11602.1.S1_at

Description tigr:9629.m05305
TID=OsAffx.11602.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5441011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54350Os.2128.1.S1_at11/111+31602090..31606233protein kinase, putative, expressed
LOC_Os01g54360OsAffx.23787.2.S1_x_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.1.S1_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.2.S1_at2/111+31607700..31610060hypothetical protein
LOC_Os01g54370Os.2131.1.S1_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54370Os.2131.1.S1_s_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54380Os.2132.1.S1_s_at11/111+31613517..31614882pentatricopeptide, putative, expressed
LOC_Os01g54390Os.33221.1.S1_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54390Os.33221.2.S1_x_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54400Os.2135.1.S1_at11/111+31625790..31627032VQ motif family protein, expressed
LOC_Os01g54410OsAffx.11602.1.S1_at11/111+31629606..31629885hypothetical protein
LOC_Os01g54420Os.32564.1.S2_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54420Os.32564.1.S1_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54430Os.34474.2.S1_at2/111+31645119..31645936Plastocyanin-like domain containing protein
LOC_Os01g54440OsAffx.21624.1.S1_s_at11/111+31647011..31648696expressed protein
LOC_Os01g54450Os.42124.1.S1_x_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54450Os.42124.1.S1_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54460NANA1+31654170..31655105hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11602.1.S1_at--222--891Chr01:31629660..31629684 (25 bp)
AGGCCGGCGCTGTTGACTAGAAGTA
LOC_Os01g54410
OsAffx.11602.1.S1_at--214--4491Chr01:31629662..31629686 (25 bp)
GCCGGCGCTGTTGACTAGAAGTAGT
LOC_Os01g54410
OsAffx.11602.1.S1_at--950--8391Chr01:31629665..31629689 (25 bp)
GGCGCTGTTGACTAGAAGTAGTATT
LOC_Os01g54410
OsAffx.11602.1.S1_at--781--2831Chr01:31629680..31629704 (25 bp)
AAGTAGTATTTCTTCCGAGCCGCAT
LOC_Os01g54410
OsAffx.11602.1.S1_at--742--6931Chr01:31629682..31629706 (25 bp)
GTAGTATTTCTTCCGAGCCGCATCG
LOC_Os01g54410
OsAffx.11602.1.S1_at--908--6871Chr01:31629685..31629709 (25 bp)
GTATTTCTTCCGAGCCGCATCGGCT
LOC_Os01g54410
OsAffx.11602.1.S1_at--833--491Chr01:31629703..31629727 (25 bp)
ATCGGCTCCTCATCATGAGGCGAGT
LOC_Os01g54410
OsAffx.11602.1.S1_at--9--911Chr01:31629720..31629799 (25 bp)
AGGCGAGTGGCGGAGTGGGACTACC
LOC_Os01g54410
OsAffx.11602.1.S1_at--724--8571Chr01:31629790..31629814 (25 bp)
TGGGACTACCGTGGTCAAGGTTTAT
LOC_Os01g54410
OsAffx.11602.1.S1_at--339--9971Chr01:31629796..31629820 (25 bp)
TACCGTGGTCAAGGTTTATGTTTTG
LOC_Os01g54410
OsAffx.11602.1.S1_at--437--8771Chr01:31629819..31629843 (25 bp)
TGTTTTGGAACAAGGTTTATGTGAA
LOC_Os01g54410
Target Sequence 
AGGCCGGCGCTGTTGACTAGAAGTAGTATTTCTTCCGAGCCGCATCGGCTCCTCATCATGAGGCGAGTGGCGGAGTGGGA
CTACCGTGGTCAAGGTTTATGTTTTGTTTTGGAACAAGGTTTATGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis