Browse Element(s) Details


OsAffx.11662.1.S1_at

Description tigr:9629.m05843
TID=OsAffx.11662.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5948011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59440Os.10369.1.S1_a_at10/111+34705945..34709933BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g59450OsAffx.2365.1.S1_at11/111+34712575..34716255hypothetical protein
LOC_Os01g59460OsAffx.11661.1.S1_x_at11/111+34724153..34724440hypothetical protein
LOC_Os01g59470OsAffx.23857.1.S1_at11/111+34725279..34726990hypothetical protein
LOC_Os01g59480OsAffx.11662.1.S1_at11/111+34728561..34729955hypothetical protein
LOC_Os01g59490Os.27966.1.S1_a_at11/111+34733225..34736049FAD-dependent oxidoreductase family protein, putative, expressed
LOC_Os01g59500Os.37510.1.S1_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_x_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_at10/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59510Os.33770.1.S1_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59510Os.33770.1.S1_s_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59520Os.52792.1.S1_at11/111+34743963..34747179expressed protein
LOC_Os01g59530Os.2216.1.S1_at11/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59530OsAffx.31569.1.S1_x_at1/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59540NANA1+34752667..34753898GRF zinc finger family protein
LOC_Os01g59550OsAffx.985.7.S1_x_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.2.S1_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.3.S1_x_at2/111+34754561..34763164Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11662.1.S1_at--894--2631Chr01:34728706..34728730 (25 bp)
AAGCCTATCGTCTCGCCAAGAATTG
LOC_Os01g59480
OsAffx.11662.1.S1_at--578--1671Chr01:34728858..34728882 (25 bp)
AGCCGCGTTGGCACATCACGAATAT
LOC_Os01g59480
OsAffx.11662.1.S1_at--291--9691Chr01:34728873..34728897 (25 bp)
TCACGAATATGGCACGTACTGTATA
LOC_Os01g59480
OsAffx.11662.1.S1_at--970--3931Chr01:34729693..34729717 (25 bp)
CGGCGGAATGCCACATGCGGGATTT
LOC_Os01g59480
OsAffx.11662.1.S1_at--767--2091Chr01:34729705..34729729 (25 bp)
ACATGCGGGATTTCGACCCGGACGA
LOC_Os01g59480
OsAffx.11662.1.S1_at--574--5951Chr01:34729731..34729755 (25 bp)
GAGCAAACCGCACGCGCCATCGAGA
LOC_Os01g59480
OsAffx.11662.1.S1_at--884--4551Chr01:34729744..34729768 (25 bp)
GCGCCATCGAGAGCGACCTGAAGAG
LOC_Os01g59480
OsAffx.11662.1.S1_at--696--3971Chr01:34729771..34729795 (25 bp)
CGGTGCGCATGCTCGTCCTGGAGAA
LOC_Os01g59480
OsAffx.11662.1.S1_at--56--3831Chr01:34729820..34729844 (25 bp)
CTGCGAGGAGCTAGCCCGGATGTAC
LOC_Os01g59480
OsAffx.11662.1.S1_at--385--7671Chr01:34729883..34729907 (25 bp)
GGGTACTGCATCCAGCTCTGCAGGC
LOC_Os01g59480
OsAffx.11662.1.S1_at--23--9491Chr01:34729899..34729923 (25 bp)
TCTGCAGGCCCAGGGCTCTACAGGA
LOC_Os01g59480
Target Sequence 
AAGCCTATCGTCTCGCCAAGAATTGGAGAAAAGCCGCGTTGGCACATCACGAATATGGCACGTACTGTATAAAGATGGGT
CGAGATTGTAGGCTGGCAGCTGCGGTGGTGCTATGGGAATCGGCGGAATGCCACATGCGGGATTTCGACCCGGACGACGA
GCAAACCGCACGCGCCATCGAGAGCGACCTGAAGAGGTCGGTGCGCATGCTCGTCCTGGAGAACCAGCCGCAGCTGGCGG
CGTCCGCCTGCGAGGAGCTAGCCCGGATGTACGTGGCGCGGAGGCGAGGGAGTGGTACGAGCGAGCCGCGGGGTACTGCA
TCCAGCTCTGCAGGCCCAGGGCTCTACAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis