Browse Element(s) Details


OsAffx.11663.1.S1_at

Description tigr:9629.m05845
TID=OsAffx.11663.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Utp11 protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5950010/11U3 small nucleolar RNA-associated protein 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59450OsAffx.2365.1.S1_at11/111+34712575..34716255hypothetical protein
LOC_Os01g59460OsAffx.11661.1.S1_x_at11/111+34724153..34724440hypothetical protein
LOC_Os01g59470OsAffx.23857.1.S1_at11/111+34725279..34726990hypothetical protein
LOC_Os01g59480OsAffx.11662.1.S1_at11/111+34728561..34729955hypothetical protein
LOC_Os01g59490Os.27966.1.S1_a_at11/111+34733225..34736049FAD-dependent oxidoreductase family protein, putative, expressed
LOC_Os01g59500Os.37510.1.S1_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_x_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_at10/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59510Os.33770.1.S1_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59510Os.33770.1.S1_s_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59520Os.52792.1.S1_at11/111+34743963..34747179expressed protein
LOC_Os01g59530Os.2216.1.S1_at11/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59530OsAffx.31569.1.S1_x_at1/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59540NANA1+34752667..34753898GRF zinc finger family protein
LOC_Os01g59550OsAffx.985.7.S1_x_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.2.S1_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.3.S1_x_at2/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.3.S1_x_at11/111+34764111..34771226Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.7.S1_x_at2/111+34764111..34771226Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11663.1.S1_at--30--2091Chr01:34737490..34737510 (21 bp)
AAAGAGGAAAACTGCTTCGTCCTAT
LOC_Os01g59500
OsAffx.11663.1.S1_at--574--6171Chr01:34737487..34737510 (24 bp)
GAGGAAAACTGCTTCGTCCTATAGG
LOC_Os01g59500
OsAffx.11663.1.S1_at--1006--5511Chr01:34737484..34737508 (25 bp)
GAAAACTGCTTCGTCCTATAGGGAG
LOC_Os01g59500
OsAffx.11663.1.S1_at--509--2411Chr01:34737483..34737507 (25 bp)
AAAACTGCTTCGTCCTATAGGGAGT
LOC_Os01g59500
OsAffx.11663.1.S1_at--551--2551Chr01:34737481..34737505 (25 bp)
AACTGCTTCGTCCTATAGGGAGTTA
LOC_Os01g59500
OsAffx.11663.1.S1_at--1063--3831Chr01:34737479..34737503 (25 bp)
CTGCTTCGTCCTATAGGGAGTTAGA
LOC_Os01g59500
OsAffx.11663.1.S1_at--516--4911Chr01:34737477..34737501 (25 bp)
GCTTCGTCCTATAGGGAGTTAGAGG
LOC_Os01g59500
OsAffx.11663.1.S1_at--458--1411NONE
AGAAAGAGTTGAAGAAACCTGGACG
NONE
OsAffx.11663.1.S1_at--1131--8111Chr01:34736897..34736921 (25 bp)
GGAAAAGAAAACTCCGTGAGGATGA
LOC_Os01g59500
OsAffx.11663.1.S1_at--89--5531Chr01:34736891..34736915 (25 bp)
GAAAACTCCGTGAGGATGAGATTGA
LOC_Os01g59500
OsAffx.11663.1.S1_at--126--8871Chr01:34736875..34736899 (25 bp)
TGAGATTGAGAATCAAACATCCCGG
LOC_Os01g59500
Target Sequence 
AAAGAGGAAAACTGCTTCGTCCTATAGGGAGTTAGAGGAGAGGAAACAGAGGGTTCAAAAGCTTGAGAAACTGTATGCAG
ACATGGCCTTGCAGAAAGAGTTGAAGAAACCTGGACGGAAAAGAAAACTCCGTGAGGATGAGATTGAGAATCAAACATCC
CGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis