Browse Element(s) Details


OsAffx.11663.1.S1_x_at

Description tigr:9629.m05845
TID=OsAffx.11663.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Utp11 protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5950011/11U3 small nucleolar RNA-associated protein 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59450OsAffx.2365.1.S1_at11/111+34712575..34716255hypothetical protein
LOC_Os01g59460OsAffx.11661.1.S1_x_at11/111+34724153..34724440hypothetical protein
LOC_Os01g59470OsAffx.23857.1.S1_at11/111+34725279..34726990hypothetical protein
LOC_Os01g59480OsAffx.11662.1.S1_at11/111+34728561..34729955hypothetical protein
LOC_Os01g59490Os.27966.1.S1_a_at11/111+34733225..34736049FAD-dependent oxidoreductase family protein, putative, expressed
LOC_Os01g59500Os.37510.1.S1_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_x_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_at10/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59510Os.33770.1.S1_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59510Os.33770.1.S1_s_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59520Os.52792.1.S1_at11/111+34743963..34747179expressed protein
LOC_Os01g59530Os.2216.1.S1_at11/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59530OsAffx.31569.1.S1_x_at1/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59540NANA1+34752667..34753898GRF zinc finger family protein
LOC_Os01g59550OsAffx.985.7.S1_x_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.2.S1_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.3.S1_x_at2/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.3.S1_x_at11/111+34764111..34771226Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.7.S1_x_at2/111+34764111..34771226Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11663.1.S1_x_at--117--3291Chr01:34738957..34738981 (25 bp)
CACAAGGACTACATCGTTCGGGCGA
LOC_Os01g59500
OsAffx.11663.1.S1_x_at--517--10611Chr01:34738941..34738965 (25 bp)
TTCGGGCGAAGGCTTTCCACCAGAA
LOC_Os01g59500
OsAffx.11663.1.S1_x_at--1018--5531Chr01:34738428..34738452 (25 bp)
GAAACCCTGATGAGTTCTATTTTAA
LOC_Os01g59500
OsAffx.11663.1.S1_x_at--1020--8871Chr01:34738385..34738406 (22 bp)
TGATGGAATTCATAGGCCTAAGCCT
LOC_Os01g59500
OsAffx.11663.1.S1_x_at--383--7651Chr01:34738216..34738240 (25 bp)
GGGATACATCCTTCAGGGTATTCAG
LOC_Os01g59500
OsAffx.11663.1.S1_x_at--914--9771Chr01:34738059..34738083 (25 bp)
TAAGCTCCATGCTTCATGAACTAGA
LOC_Os01g59500
OsAffx.11663.1.S1_x_at--9--5931Chr01:34737845..34737869 (25 bp)
GAGCAGTTCACTTGGTTTGGACAAC
LOC_Os01g59500
OsAffx.11663.1.S1_x_at--762--2191Chr01:34737825..34737849 (25 bp)
ACAACATCCCTTCCCGTATAAAGAG
LOC_Os01g59500
OsAffx.11663.1.S1_x_at--1007--5511Chr01:34737484..34737508 (25 bp)
GAAAACTGCTTCGTCCTATAGGGAG
LOC_Os01g59500
OsAffx.11663.1.S1_x_at--301--5551Chr01:34737424..34737448 (25 bp)
GAAACTGTATGCAGACATGGCCTTG
LOC_Os01g59500
OsAffx.11663.1.S1_x_at--1023--31Chr01:34736871..34736895 (25 bp)
ATTGAGAATCAAACATCCCGGCCTG
LOC_Os01g59500
Target Sequence 
CACAAGGACTACATCGTTCGGGCGAAGGCTTTCCACCAGAAGGAGGAAACCATCAGGAAATTGAAGGAGAAGGCATCATT
TAGAAACCCTGATGAGTTCTATTTTAAGATGATCAACAGCAAGACTGTTGATGGAATTCATAGGCCTAAGCCTGAAGCAA
ACAAGTATACTGAAGATGAACTCATGCTGCTAAAAACTAAAGATATGGGATACATCCTTCAGGGTATTCAGAGTGAAAAG
AAGAAAATTGAAAAATTAAGCTCCATGCTTCATGAACTAGACAACAAGCGACCAAACAAGCATGTTTACTTTGCTGAAGA
CAGAGAAGAGGTCAAAGAAATACAATCTAGAATAGAACAAAAGAGCAGTTCACTTGGTTTGGACAACATCCCTTCCCGTA
TAAAGAGGAAAACTGCTTCGTCCTATAGGGAGTTAGAGGAGAGGAAACAGAGGGTTCAAAAGCTTGAGAAACTGTATGCA
GACATGGCCTTGCAGAAAGAGTTGAAGAAACCTGGACGGAAAAGAAAACTCCGTGAGGATGAGATTGAGAATCAAACATC
CCGGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11663.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis