Browse Element(s) Details


OsAffx.11753.1.S1_at

Description tigr:9629.m06560
TID=OsAffx.11753.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6615010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66130Os.17102.1.S1_at10/111+38736091..38739906arm repeat-containing protein, putative, expressed
LOC_Os01g66140Os.52769.1.S1_at6/111+38740330..38751209Plus-3 domain containing protein, expressed
LOC_Os01g66150OsAffx.11753.1.S1_at10/111+38758155..38760519expressed protein
LOC_Os01g66150OsAffx.13530.1.S1_at1/111+38758155..38760519expressed protein
LOC_Os01g66160OsAffx.23934.1.S1_at11/111+38762370..38763923selenium-binding protein, putative, expressed
LOC_Os01g66170Os.27670.1.S1_at10/111+38763995..38767261expressed protein
LOC_Os01g66180Os.11485.1.S1_at9/111+38770476..38773268Cytochrome c, putative, expressed
LOC_Os01g66190Os.16257.1.S1_at11/111+38774986..38777347expressed protein
LOC_Os01g66200Os.10888.1.S1_at11/111+38781690..38787380expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11753.1.S1_at--1149--3911Chr01:38760022..38760046 (25 bp)
CGGCGCTGTGGTCGGACTCGTCGGA
LOC_Os01g66150
OsAffx.11753.1.S1_at--140--8511Chr01:38759867..38759891 (25 bp)
TGGCACCTGCCGATGGGCGTGCTCC
LOC_Os01g66150
OsAffx.11753.1.S1_at--428--971Chr01:38759819..38759843 (25 bp)
AGGAGCGTGTGGTCGTTGCCCGTCG
LOC_Os01g66150
OsAffx.11753.1.S1_at--1017--9331Chr01:38759452..38759728 (25 bp)
TCGACGAAAAGGGTGAAAACAGCAT
LOC_Os01g66150
OsAffx.11753.1.S1_at--107--2451Chr01:38759427..38759451 (25 bp)
AAAATTTCAACTTCCCTATCCATTG
LOC_Os01g66150
OsAffx.11753.1.S1_at--1013--3251Chr01:38759420..38759444 (25 bp)
CAACTTCCCTATCCATTGAAAACAA
LOC_Os01g66150
OsAffx.11753.1.S1_at--872--2311Chr01:38759396..38759420 (25 bp)
AAAGGTGCAGTTCTCAAGTCTCAAA
LOC_Os01g66150
OsAffx.11753.1.S1_at--657--9671Chr01:38759383..38759407 (25 bp)
TCAAGTCTCAAACCAAACACAAACC
LOC_Os01g66150
OsAffx.11753.1.S1_at--1082--3271Chr01:38759364..38759388 (25 bp)
CAAACCATTTTACTTCAGGAACCTG
LOC_Os01g66150
OsAffx.11753.1.S1_at--494--8171Chr01:38759347..38759371 (25 bp)
GGAACCTGATATTACTGGCTAAGCA
LOC_Os01g66150
OsAffx.11753.1.S1_at--596--8311NONE
GGCTAAGCATAAGGCATCCCAGTTC
NONE
Target Sequence 
CGGCGCTGTGGTCGGACTCGTCGGACGACGGGGAGAGGCGGGAGGAGGCCGAGGCCACCGAGCCGCTGCCGGTGGAGGCG
GCAGCGGCGGAGGTGGAGGCGGGCGAGGGCGCGGTGACGAAGGGCGGAGGGGCTGGGGCGGGGGTGGTGCGGTGGTGGCA
CCTGCCGATGGGCGTGCTCCGGGCGTGGGCGCTGCGGGCGGCGAGGAGCGTGTGGTCGTTGCCCGTCGCCGTCGCGCTGC
TCGGCATCGCCGTGCTGGGGCGGCGCCTGTACCGCATGCGGCGGCAGAGCAAGGCCGTGGCGCGCGTCCGCCTCGTCCTC
GACGAAAAGGGTGAAAACAGCATAAAATTTCAACTTCCCTATCCATTGAAAACAAAAGGTGCAGTTCTCAAGTCTCAAAC
CAAACACAAACCATTTTACTTCAGGAACCTGATATTACTGGCTAAGCATAAGGCATCCCAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis