Browse Element(s) Details


OsAffx.11769.1.S1_s_at

Description gb:NM_190285.1
DB_XREF= gi:34907653
GEN=P0674H09.26
TID=OsAffx.11769.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0674H09.26 (P0674H09.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6728011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67250Os.27893.2.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S2_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.3.S1_x_at10/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67260OsAffx.23952.1.S1_at11/111+39367480..39368971hypothetical protein
LOC_Os01g67270OsAffx.23953.1.S1_at8/111+39373991..39374761expressed protein
LOC_Os01g67280OsAffx.11769.1.S1_s_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67280OsAffx.11769.2.S1_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67290Os.10859.1.S1_a_at11/111+39379134..39385378cyclin, putative, expressed
LOC_Os01g67300OsAffx.23954.1.S1_at11/111+39390294..39392106expressed protein
LOC_Os01g67300Os.16281.1.A1_s_at3/111+39390294..39392106expressed protein
LOC_Os01g67310Os.15943.1.S1_at11/111+39393026..39395480Patatin-like phospholipase family protein, expressed
LOC_Os01g67314Os.36852.1.S1_at11/111+39396981..39399517expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11769.1.S1_s_at--36--7691Chr01:39378085..39378109 (25 bp)
GGGTCGCCCGGCGTCGCGGAGGTCG
LOC_Os01g67280
OsAffx.11769.1.S1_s_at--62--4171Chr01:39378005..39378029 (25 bp)
CCCTGCGGCGGAGAGACCTAGATGC
LOC_Os01g67280
OsAffx.11769.1.S1_s_at--724--8051Chr01:39377996..39378020 (25 bp)
GGAGAGACCTAGATGCCTGCTTCGT
LOC_Os01g67280
OsAffx.11769.1.S1_s_at--1017--1371Chr01:39377992..39378016 (25 bp)
AGACCTAGATGCCTGCTTCGTCTAT
LOC_Os01g67280
OsAffx.11769.1.S1_s_at--138--10031Chr01:39377987..39378011 (25 bp)
TAGATGCCTGCTTCGTCTATGGCGC
LOC_Os01g67280
OsAffx.11769.1.S1_s_at--718--9071Chr01:39377979..39378003 (25 bp)
TGCTTCGTCTATGGCGCCGCAAGAA
LOC_Os01g67280
OsAffx.11769.1.S1_s_at--348--5171Chr01:39377961..39377985 (25 bp)
GCAAGAACCGCCACAACAAGAACGC
LOC_Os01g67280
OsAffx.11769.1.S1_s_at--842--4391Chr01:39377952..39377976 (25 bp)
GCCACAACAAGAACGCGGCGGGAGA
LOC_Os01g67280
OsAffx.11769.1.S1_s_at--1009--1431Chr01:39377943..39377967 (25 bp)
AGAACGCGGCGGGAGAGGCTGATTT
LOC_Os01g67280
OsAffx.11769.1.S1_s_at--706--911Chr01:39377928..39377952 (25 bp)
AGGCTGATTTGGAGGCACCTCTACT
LOC_Os01g67280
OsAffx.11769.1.S1_s_at--800--6511Chr01:39377923..39377947 (25 bp)
GATTTGGAGGCACCTCTACTCCATC
LOC_Os01g67280
Target Sequence 
GGGTCGCCCGGCGTCGCGGAGGTCGCCGGCGACCTGGCGCACGCCGCGCATGACTGCGTCCGCGCCCTGGTCGAGTCGGG
CCCTGCGGCGGAGAGACCTAGATGCCTGCTTCGTCTATGGCGCCGCAAGAACCGCCACAACAAGAACGCGGCGGGAGAGG
CTGATTTGGAGGCACCTCTACTCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11769.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis