Browse Element(s) Details


OsAffx.11785.1.S1_at

Description tigr:9629.m06759
TID=OsAffx.11785.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6809011/11Harpin-induced protein 1 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68050Os.8422.1.S1_at11/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68050Os.47836.1.A1_at4/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68060Os.11396.1.S1_at11/111+39892600..39896895Copine family protein, expressed
LOC_Os01g68070Os.52250.1.A1_at11/111+39903897..39907035salt-inducible protein, putative, expressed
LOC_Os01g68080OsAffx.23965.1.S1_at11/111+39907344..39908254Harpin-induced protein 1 containing protein
LOC_Os01g68090OsAffx.11785.1.S1_at11/111+39909204..39910571Harpin-induced protein 1 containing protein
LOC_Os01g68104OsAffx.2432.1.S1_at11/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104Os.19434.1.S1_at9/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.3.S1_at7/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.2.S1_x_at2/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.1.S1_at1/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68120Os.49417.1.S1_at11/111+39919469..39932566RNase3 domain containing protein, expressed
LOC_Os01g68130OsAffx.2433.1.S1_at9/111+39935234..39938852hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11785.1.S1_at--137--10611Chr01:39909722..39909746 (25 bp)
TTCTGGCTGCTGGTCATCGCCGTTG
LOC_Os01g68090
OsAffx.11785.1.S1_at--1068--8971Chr01:39909625..39909649 (25 bp)
TGAACGCCGGGTACGTCGACGAGCT
LOC_Os01g68090
OsAffx.11785.1.S1_at--1134--9411Chr01:39909517..39909541 (25 bp)
TCGTGCTCCGCTACATGCAGCTGGA
LOC_Os01g68090
OsAffx.11785.1.S1_at--269--651Chr01:39909503..39909527 (25 bp)
ATGCAGCTGGACCTCTACTTCCAGG
LOC_Os01g68090
OsAffx.11785.1.S1_at--863--5831Chr01:39909494..39909518 (25 bp)
GACCTCTACTTCCAGGGCAGCATGA
LOC_Os01g68090
OsAffx.11785.1.S1_at--214--9231Chr01:39909484..39909508 (25 bp)
TCCAGGGCAGCATGATCGGGACGCA
LOC_Os01g68090
OsAffx.11785.1.S1_at--786--9671Chr01:39909382..39909406 (25 bp)
TCACCATGACGCAGGAGGACGTGTA
LOC_Os01g68090
OsAffx.11785.1.S1_at--749--1871Chr01:39909358..39909382 (25 bp)
ACGAGTGGCAGAACGCAACGAGCAA
LOC_Os01g68090
OsAffx.11785.1.S1_at--1045--191Chr01:39909284..39909308 (25 bp)
ATCTTCGGCCGGTGGTTCAAGTTCA
LOC_Os01g68090
OsAffx.11785.1.S1_at--100--10491Chr01:39909269..39909293 (25 bp)
TTCAAGTTCAACTACTGGGTCTCGC
LOC_Os01g68090
OsAffx.11785.1.S1_at--515--2531Chr01:39909260..39909284 (25 bp)
AACTACTGGGTCTCGCCGCAGTGCA
LOC_Os01g68090
Target Sequence 
TTCTGGCTGCTGGTCATCGCCGTTGGCGCCGCCGTGCTCGTCATCTTCCTCATCTACCACCCGCAGTCGCCCAGGATGCG
GGTGACCTCCGCCACCCTGAACGCCGGGTACGTCGACGAGCTCGGCATCGTCGGCGGCGCGCGCGCGCTCAACGCCGACC
TCACCGTCCTCGCCGCCATCTACAACCCCAACACCAAGCTCCACGTCGTGCTCCGCTACATGCAGCTGGACCTCTACTTC
CAGGGCAGCATGATCGGGACGCAGGCGGTGTGGCCGGCGCCGCTGCACGAGGGCCCCCGCGGCAGCGTGCTCCGGAGCGT
CCACCTCGTCGTCAGCGAGGTCACCATGACGCAGGAGGACGTGTACGAGTGGCAGAACGCAACGAGCAAGGGCGGGCCCG
TGGTGCTGCACCTCGCCGGACGCTTCCGCGCGCGGCTCATCTTCGGCCGGTGGTTCAAGTTCAACTACTGGGTCTCGCCG
CAGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis