Browse Element(s) Details


OsAffx.11869.1.S1_at

Description tigr:9630.m00202
TID=OsAffx.11869.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0290011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02870Os.4724.1.S1_at11/112+1103043..1104294Zinc knuckle family protein, expressed
LOC_Os02g02880Os.11422.1.S1_at11/112+1106261..1111999expressed protein
LOC_Os02g02890Os.4157.1.S1_s_at11/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.4157.1.S1_at11/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.57490.1.S1_x_at10/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.25594.1.S1_at1/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02900OsAffx.11869.1.S1_at11/112+1123522..1125414expressed protein
LOC_Os02g02910Os.52234.1.S1_at11/112+1126060..1132613expressed protein
LOC_Os02g02910Os.6440.1.S1_at1/112+1126060..1132613expressed protein
LOC_Os02g02920Os.8939.1.S1_s_at11/112+1134727..1139272HVA22-like protein i, putative, expressed
LOC_Os02g02930Os.57103.1.S1_at11/112+1145837..1151141Terpene synthase family, metal binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11869.1.S1_at--613--7491Chr02:1124880..1124904 (25 bp)
GTGGGTTGAGGAGCAGCGCGCCGTC
LOC_Os02g02900
OsAffx.11869.1.S1_at--146--9351Chr02:1124843..1124867 (25 bp)
TCGCAGGAAAACTCGCATCTATCCA
LOC_Os02g02900
OsAffx.11869.1.S1_at--715--8151Chr02:1124841..1124862 (22 bp)
GGAAAACTCGCATCTATCCAAGCAA
LOC_Os02g02900
OsAffx.11869.1.S1_at--702--2531Chr02:1124667..1124858 (25 bp)
AACTCGCATCTATCCAAGCAAATCG
LOC_Os02g02900
OsAffx.11869.1.S1_at--1094--4951Chr02:1124662..1124853 (25 bp)
GCATCTATCCAAGCAAATCGAGGAG
LOC_Os02g02900
OsAffx.11869.1.S1_at--810--511Chr02:1124646..1124670 (25 bp)
ATCGAGGAGTACAGAGTCCGGCTGC
LOC_Os02g02900
OsAffx.11869.1.S1_at--193--2151Chr02:1124636..1124660 (25 bp)
ACAGAGTCCGGCTGCAGAGCTCGAG
LOC_Os02g02900
OsAffx.11869.1.S1_at--263--4811Chr02:1124618..1124642 (25 bp)
GCTCGAGGAGCACCAATGACGGATT
LOC_Os02g02900
OsAffx.11869.1.S1_at--126--5091Chr02:1124609..1124633 (25 bp)
GCACCAATGACGGATTGAAGCAGAT
LOC_Os02g02900
OsAffx.11869.1.S1_at--305--7311Chr02:1124087..1124111 (25 bp)
GTGCTGGACCTGAACGAGCCGGCGC
LOC_Os02g02900
OsAffx.11869.1.S1_at--24--4711Chr02:1123994..1124018 (25 bp)
GCGGCGGAGTGGTACCACCTGGGAC
LOC_Os02g02900
Target Sequence 
GTGGGTTGAGGAGCAGCGCGCCGTCGTCGCGAGCTTGTCGCAGGAAAACTCGCATCTATCCAAGCAAATCGAGGAGTACA
GAGTCCGGCTGCAGAGCTCGAGGAGCACCAATGACGGATTGAAGCAGATGCAGCGCAAGCTGAAGCGGCAGCGGGAGCAT
GAGGAGGAAGAGGAGGTGAATCGGAAGCGGCGGGTGGAGGCGGCGGCGGCGGCAGCCGACATTGTCCGGCCGGCGCCGGT
GCTGGACCTGAACGAGCCGGCGCGGGCGCCGGAGGAGGACGACGACGATGCCGTCGCCGTCGCCGCCGCCAAGGCCGCGG
CGGCGGCGGCGGCGGCGGAGTGGTACCACCTGGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis