Browse Element(s) Details


OsAffx.11934.1.S1_x_at

Description tigr:9630.m00756
TID=OsAffx.11934.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0800011/11hypothetical protein
LOC_Os06g096791/1120 kDa chaperonin, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07960Os.38295.1.S3_at11/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07960Os.38295.1.S2_at11/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07960Os.38295.1.S1_at10/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07970OsAffx.2544.1.S1_at10/112+4181865..4182335hypothetical protein
LOC_Os02g07980Os.10693.2.S1_at11/112+4184164..4185808expressed protein
LOC_Os02g07990OsAffx.11933.1.S1_at11/112+4186144..4186455hypothetical protein
LOC_Os02g08000OsAffx.11934.1.S1_x_at11/112+4190114..4190497hypothetical protein
LOC_Os02g08000OsAffx.11934.1.S1_at8/112+4190114..4190497hypothetical protein
LOC_Os02g08010OsAffx.24158.1.S1_at11/112+4196023..4208367Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os02g08020OsAffx.11935.1.S1_at10/112+4214152..4215191hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0005516molecular_functioncalmodulin binding
GO:0051087molecular_functionchaperone binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11934.1.S1_x_at--722--3931Chr02:4190403..4190427 (25 bp)
CGGAGATGCCGGAGTTCGAGGAGGT
LOC_Os02g08000
OsAffx.11934.1.S1_x_at--517--991Chr02:4190385..4190409 (25 bp)
AGGAGGTGGTGCTGTGCAGCACGCC
LOC_Os02g08000
OsAffx.11934.1.S1_x_at--503--991Chr02:4190281..4190305 (25 bp)
AGGAGGAAGAAGGACGCTCGCTTTA
LOC_Os02g08000
OsAffx.11934.1.S1_x_at--317--5371Chr02:4190276..4190300 (25 bp)
GAAGAAGGACGCTCGCTTTAGCCGC
LOC_Os02g08000
OsAffx.11934.1.S1_x_at--1061--2731Chr02:4190275..4190299 (25 bp)
AAGAAGGACGCTCGCTTTAGCCGCA
LOC_Os02g08000
OsAffx.11934.1.S1_x_at--655--1451Chr02:4190274..4190298 (25 bp)
AGAAGGACGCTCGCTTTAGCCGCAG
LOC_Os02g08000
OsAffx.11934.1.S1_x_at--32--9352Chr06:4932961..4932980 (20 bp)
TCGCTTTAGCCGCAGCTGCTACTGC
LOC_Os06g09679
OsAffx.11934.1.S1_x_at--772--4231Chr02:4190190..4190214 (25 bp)
CCGTGCCGGACGATCTCGCCAAGGT
LOC_Os02g08000
OsAffx.11934.1.S1_x_at--239--9191Chr02:4190187..4190211 (25 bp)
TGCCGGACGATCTCGCCAAGGTGTT
LOC_Os02g08000
OsAffx.11934.1.S1_x_at--1144--4471Chr02:4190186..4190210 (25 bp)
GCCGGACGATCTCGCCAAGGTGTTC
LOC_Os02g08000
OsAffx.11934.1.S1_x_at--985--7731Chr02:4190168..4190192 (25 bp)
GGTGTTCGTCCCACGGCGGCCGGTG
LOC_Os02g08000
Target Sequence 
CGGAGATGCCGGAGTTCGAGGAGGTGGTGCTGTGCAGCACGCCGACGGCGGCGGCGAGCGTGCTGCGGGCGCCGTCGGTG
TGCCCGCCGGCGCCGAGGAAGCCGCCGAGGCCAGCCGCCAAGAGGAGGAAGAAGGACGCTCGCTTTAGCCGCAGCTGCTA
CTGCTGCGGGCGGCGCCGCGGCGGGAGGGCGCCGGCGGCGGCGGCGTTCGTCGCCGTGCCGGACGATCTCGCCAAGGTGT
TCGTCCCACGGCGGCCGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11934.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis