Browse Element(s) Details


OsAffx.11947.1.S1_at

Description tigr:9630.m00832
TID=OsAffx.11947.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0919011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09150Os.13494.1.S1_at11/112+4693858..4699297Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os02g09160OsAffx.24170.1.S1_at11/112+4704820..4706525hypothetical protein
LOC_Os02g09160OsAffx.30475.1.S1_s_at4/112+4704820..4706525hypothetical protein
LOC_Os02g09160OsAffx.2812.1.S1_at1/112+4704820..4706525hypothetical protein
LOC_Os02g09170Os.22727.1.S1_at11/112+4708490..4716877Sucrose-phosphate synthase 1, putative, expressed
LOC_Os02g09180Os.7561.1.S1_at11/112+4717683..4720604CUE domain containing protein, expressed
LOC_Os02g09190OsAffx.11947.1.S1_at11/112+4721029..4722709Cytochrome P450 family protein, expressed
LOC_Os02g09200OsAffx.11948.1.S1_at11/112+4724316..4726012Cytochrome P450 family protein, expressed
LOC_Os02g09210OsAffx.11949.1.S1_at11/112+4729991..4730317hypothetical protein
LOC_Os02g09220Os.53919.1.S1_at11/112+4740046..4743110Cytochrome P450 family protein, expressed
LOC_Os02g09220Os.54895.1.S1_x_at1/112+4740046..4743110Cytochrome P450 family protein, expressed
LOC_Os02g09230OsAffx.24171.1.S1_at11/112+4747250..4748210hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11947.1.S1_at--665--1651Chr02:4721554..4721578 (25 bp)
AGCCGAGCTACGTAACAAGCTTCAA
LOC_Os02g09190
OsAffx.11947.1.S1_at--403--2651Chr02:4721526..4721550 (25 bp)
AAGCCAAGTGTGACCGAAGATGACC
LOC_Os02g09190
OsAffx.11947.1.S1_at--819--5351Chr02:4721511..4721535 (25 bp)
GAAGATGACCTAGTTGGCCTAACCT
LOC_Os02g09190
OsAffx.11947.1.S1_at--602--10871Chr02:4721498..4721522 (25 bp)
TTGGCCTAACCTACTTAAAGCTCGT
LOC_Os02g09190
OsAffx.11947.1.S1_at--647--5071Chr02:4721442..4721466 (25 bp)
GCACCAATGCTTGTCCCAAGGGAGT
LOC_Os02g09190
OsAffx.11947.1.S1_at--432--2891Chr02:4721403..4721427 (25 bp)
AAGGTGCTAGGGTACGACGTGCCCA
LOC_Os02g09190
OsAffx.11947.1.S1_at--317--7571Chr02:4721351..4721375 (25 bp)
GGGCGATTGGCAGAGACCCCAATTA
LOC_Os02g09190
OsAffx.11947.1.S1_at--407--8951Chr02:4721320..4721344 (25 bp)
TGACACGGAGACGTTCAAACCAGAT
LOC_Os02g09190
OsAffx.11947.1.S1_at--511--2511Chr02:4721274..4721298 (25 bp)
AACTTTAGAGGCACCGATTTCGAGT
LOC_Os02g09190
OsAffx.11947.1.S1_at--145--6091Chr02:4721253..4721277 (25 bp)
GAGTACATACCGTTTGGATCTAGAC
LOC_Os02g09190
OsAffx.11947.1.S1_at--1046--10011Chr02:4721233..4721257 (25 bp)
TAGACGAAAGATCTGCCCTGGTCCG
LOC_Os02g09190
Target Sequence 
AGCCGAGCTACGTAACAAGCTTCAAGGGAAGCCAAGTGTGACCGAAGATGACCTAGTTGGCCTAACCTACTTAAAGCTCG
TCATCAAGGAAACCCTAAGACTGCACCCCGCCGCACCAATGCTTGTCCCAAGGGAGTGTGGGGAGTCGTGCAAGGTGCTA
GGGTACGACGTGCCCAGGGGCACTAACGTGCTCATCAACGCGTGGGCGATTGGCAGAGACCCCAATTACTGGGATGACAC
GGAGACGTTCAAACCAGATAGGTGTGAGAATAACAAGTATAACTTTAGAGGCACCGATTTCGAGTACATACCGTTTGGAT
CTAGACGAAAGATCTGCCCTGGTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis