Browse Element(s) Details


OsAffx.11963.1.S1_at

Description tigr:9630.m00899
TID=OsAffx.11963.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=bZIP transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0983011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09770Os.27546.1.A1_at11/112+5038908..5043308expressed protein
LOC_Os02g09780Os.57154.1.S1_at11/112+5045332..5047098expressed protein
LOC_Os02g09790OsAffx.24178.1.S1_at11/112+5048653..5051394NB-ARC domain containing protein, expressed
LOC_Os02g09800OsAffx.15994.2.S1_at11/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09800OsAffx.15994.1.S1_x_at2/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09810Os.25128.1.S1_at11/112+5058734..5061962amino acid transporter family protein, putative, expressed
LOC_Os02g09820Os.52048.1.S1_at11/112+5063134..5066606Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g09830OsAffx.11963.1.S1_at11/112+5067202..5068039bZIP transcription factor family protein, expressed
LOC_Os02g09840Os.20243.1.S1_at11/112+5071340..5075444calcium-binding EF hand family protein, putative, expressed
LOC_Os02g09840OsAffx.11964.1.S1_at11/112+5071340..5075444calcium-binding EF hand family protein, putative, expressed
LOC_Os02g09850Os.51629.1.S1_at10/112+5079074..5079709expressed protein
LOC_Os02g09860NANA2+5090349..5091312retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11963.1.S1_at--38--4731Chr02:5067687..5067711 (25 bp)
GCTGGTGTCAAACCGTGAGTCTGCA
LOC_Os02g09830
OsAffx.11963.1.S1_at--453--6311Chr02:5067629..5067653 (25 bp)
GATGAGCTCTCATCTCAGGTTTCAG
LOC_Os02g09830
OsAffx.11963.1.S1_at--596--7871Chr02:5067612..5067636 (25 bp)
GGTTTCAGAGCTTCGAGACACCAAC
LOC_Os02g09830
OsAffx.11963.1.S1_at--219--5991Chr02:5067598..5067622 (25 bp)
GAGACACCAACCAGAGGCTTCTTGT
LOC_Os02g09830
OsAffx.11963.1.S1_at--754--8291Chr02:5067583..5067607 (25 bp)
GGCTTCTTGTTGAGCTGAATCACAT
LOC_Os02g09830
OsAffx.11963.1.S1_at--776--711Chr02:5067560..5067584 (25 bp)
ATGATCTCCAAGCATGCTCGCATTG
LOC_Os02g09830
OsAffx.11963.1.S1_at--1050--4791Chr02:5067545..5067569 (25 bp)
GCTCGCATTGTCAGGGAGAATTCCC
LOC_Os02g09830
OsAffx.11963.1.S1_at--1038--5371Chr02:5067512..5067536 (25 bp)
GAAGAAGCTTCTGACCTGCAGAGAA
LOC_Os02g09830
OsAffx.11963.1.S1_at--1088--4751Chr02:5067440..5067464 (25 bp)
GCTGCAGCACCACGAACATTAGAAG
LOC_Os02g09830
OsAffx.11963.1.S1_at--886--1671Chr02:5067349..5067373 (25 bp)
AGCCTTGGAGTGTTGCATACTGCAT
LOC_Os02g09830
OsAffx.11963.1.S1_at--1006--7031Chr02:5067244..5067268 (25 bp)
GTAATTCGAGACTACTACCTTTGTA
LOC_Os02g09830
Target Sequence 
GCTGGTGTCAAACCGTGAGTCTGCAAGGAGGTCCCGGGTGAGGAAGCAGAGGCGCCTGGATGAGCTCTCATCTCAGGTTT
CAGAGCTTCGAGACACCAACCAGAGGCTTCTTGTTGAGCTGAATCACATGATCTCCAAGCATGCTCGCATTGTCAGGGAG
AATTCCCAGCTCAGAGAAGAAGCTTCTGACCTGCAGAGAAAGCTCAGTGAGATGAAAATGGAAGATGCTGAAGTAGCTGC
TGCTGCTGCTGCAGCACCACGAACATTAGAAGTAGCTTAATTAATTATTTAAGCTAGTTCTAATGTTCACTAATTAATTG
CAGCATATCATGGCTAGTAGCCTTGGAGTGTTGCATACTGCATAGTTGTACTACTAATTAATTATAGGTGAATATTCTTT
TTTTTTTATTTTTATTTTTCCTTTGTGCAAAGAGAGCATATAGGTAATTCGAGACTACTACCTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis