Browse Element(s) Details


OsAffx.12003.1.S1_at

Description tigr:9630.m01131
TID=OsAffx.12003.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1245011/11Leucine Rich Repeat family protein
LOC_Os02g123409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12400Os.54164.1.S1_at11/112+6468826..6472843Leucine Rich Repeat family protein, expressed
LOC_Os02g12410Os.53025.1.S1_at1/112+6474514..6474992U-box domain-containing protein, putative
LOC_Os02g12420Os.53706.1.S1_at11/112+6476683..6480097Leucine Rich Repeat family protein, expressed
LOC_Os02g12430NANA2+6482468..6483370hypothetical protein
LOC_Os02g12440Os.52024.1.S1_at11/112+6488454..6490577Protein kinase domain containing protein, expressed
LOC_Os02g12450OsAffx.12003.1.S1_at11/112+6491390..6495136Leucine Rich Repeat family protein
LOC_Os02g12450OsAffx.12003.2.S1_s_at11/112+6491390..6495136Leucine Rich Repeat family protein
LOC_Os02g12450OsAffx.12003.2.S1_at1/112+6491390..6495136Leucine Rich Repeat family protein
LOC_Os02g12460Os.52655.1.S1_x_at2/112+6496710..6497737hypothetical protein
LOC_Os02g12460OsAffx.19426.1.S1_x_at1/112+6496710..6497737hypothetical protein
LOC_Os02g12470Os.30575.1.A1_at5/112+6502150..6504010hypothetical protein
LOC_Os02g12480Os.7929.2.S1_a_at11/112+6510378..6515996expressed protein
LOC_Os02g12480Os.7929.4.S1_x_at2/112+6510378..6515996expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12003.1.S1_at--1001--3592Chr02:6494281..6494305 (25 bp)
CATTGATGTGGTTTCTGCACTTGAT
LOC_Os02g12450
OsAffx.12003.1.S1_at--722--10592Chr02:6494293..6494317 (25 bp)
TTCTGCACTTGATTATCTTCACCAA
LOC_Os02g12450
OsAffx.12003.1.S1_at--424--10152Chr02:6494306..6494330 (25 bp)
TATCTTCACCAACATAGGCCATTGC
LOC_Os02g12450
OsAffx.12003.1.S1_at--602--9932Chr02:6494759..6494783 (25 bp)
TACGGTTTGGGCAATGAGGTTTCAA
LOC_Os02g12450
OsAffx.12003.1.S1_at--1149--3192Chr02:6494770..6494794 (25 bp)
CAATGAGGTTTCAATTCTGGGTGAT
LOC_Os02g12450
OsAffx.12003.1.S1_at--869--2751Chr02:6494839..6494863 (25 bp)
AAGACCAACTGGCACTGAATTTAGA
LOC_Os02g12450
OsAffx.12003.1.S1_at--1162--10411Chr02:6494859..6494883 (25 bp)
TTAGAGAAGCTCTCAGCCTTCATAA
LOC_Os02g12450
OsAffx.12003.1.S1_at--222--1592Chr02:6494866..6494890 (25 bp)
AGCTCTCAGCCTTCATAATTATGTA
LOC_Os02g12450
OsAffx.12003.1.S1_at--418--3132Chr02:6494882..6494906 (25 bp)
AATTATGTAAAGATGGCACTTCCAG
LOC_Os02g12450
OsAffx.12003.1.S1_at--12--8232Chr02:6494896..6494920 (25 bp)
GGCACTTCCAGACAATGTGATCGAT
LOC_Os02g12450
OsAffx.12003.1.S1_at--575--6392Chr02:6494914..6494938 (25 bp)
GATCGATATTGCAGACCAACACTTA
LOC_Os02g12450
Target Sequence 
CATTGATGTGGTTTCTGCACTTGATTATCTTCACCAACATAGGCCATTGCCAATTATTCACTGTGATCTCAAGCCAAGCA
ATATTCTCCTAGATAGTGAAATGGTTGCTCACGTTGGTGATTTTGGGCTTGCAAGAGTCCTGCATCAAGACCATAGTGAC
ATGTTAGAGAAATCAAGTGGCTGGGCTACAATGAGAGGAACAATTGGATATGCTGCTCCAGAGTACGGTTTGGGCAATGA
GGTTTCAATTCTGGGTGATGTCTACAGCTATGGTATACTGTTGCTGGAGATGTTTACCGGAAAAAGACCAACTGGCACTG
AATTTAGAGAAGCTCTCAGCCTTCATAATTATGTAAAGATGGCACTTCCAGACAATGTGATCGATATTGCAGACCAACAC
TTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis