Browse Element(s) Details


OsAffx.12008.1.S1_x_at

Description tigr:9630.m01145
TID=OsAffx.12008.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1260011/11NOL1/NOP2/sun family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12540OsAffx.2585.1.S1_at11/112+6556026..6558023Cytochrome P450 family protein
LOC_Os02g12550Os.49199.1.S1_at11/112+6559488..6562188Cytochrome P450 family protein, expressed
LOC_Os02g12560NANA2+6566133..6566588expressed protein
LOC_Os02g12570Os.37484.1.S1_at10/112+6568159..6572501Pre-mRNA cleavage complex II protein Clp1 containing protein, expressed
LOC_Os02g12580Os.10337.2.S1_at11/112+6572766..6577608Serine/threonine protein phosphatase PP2A-3 catalytic subunit, putative, expressed
LOC_Os02g12580Os.10337.1.S1_x_at11/112+6572766..6577608Serine/threonine protein phosphatase PP2A-3 catalytic subunit, putative, expressed
LOC_Os02g12590OsAffx.12007.1.S1_at10/112+6578959..6579539hypothetical protein
LOC_Os02g12600OsAffx.12008.1.S1_x_at11/112+6582328..6587404NOL1/NOP2/sun family protein, expressed
LOC_Os02g12600Os.18147.1.S1_at10/112+6582328..6587404NOL1/NOP2/sun family protein, expressed
LOC_Os02g12610OsAffx.24212.1.S1_at11/112+6587538..6588065Hsp20/alpha crystallin family protein
LOC_Os02g12610OsAffx.24212.1.S1_x_at11/112+6587538..6588065Hsp20/alpha crystallin family protein
LOC_Os02g12620NANA2+6588391..6590160retrotransposon protein, putative, unclassified
LOC_Os02g12630OsAffx.10901.1.S1_at3/112+6591946..6594769retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g12640OsAffx.24213.1.S1_at11/112+6595265..6595657hypothetical protein
LOC_Os02g12650Os.11236.1.S1_at11/112+6599222..6606524Peptidase family M1 containing protein, expressed
LOC_Os02g12660Os.15687.2.A1_at11/112+6609459..6613879protein kinase family protein, putative, expressed
LOC_Os02g12660OsAffx.15330.1.S1_x_at1/112+6609459..6613879protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005730cellular_componentnucleolus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12008.1.S1_x_at--705--5031Chr02:6584876..6584900 (25 bp)
GCAGTTGCATTATGCCCTGAGCCAG
LOC_Os02g12600
OsAffx.12008.1.S1_x_at--41--651Chr02:6585483..6585507 (25 bp)
ATGCATGTGCGGCTCCAGGGAATAA
LOC_Os02g12600
OsAffx.12008.1.S1_x_at--130--1151Chr02:6585511..6585535 (25 bp)
AGTCCATCTTGCTGCACTCATGAAT
LOC_Os02g12600
OsAffx.12008.1.S1_x_at--540--711Chr02:6586140..6586161 (22 bp)
ATGATCCATCATATGCCGAGGTCCG
LOC_Os02g12600
OsAffx.12008.1.S1_x_at--172--4511Chr02:6586268..6586288 (21 bp)
GCCGAGGTCCGAGCTATTCTATTAG
LOC_Os02g12600
OsAffx.12008.1.S1_x_at--780--111Chr02:6586279..6586303 (25 bp)
ATTCTATTAGATCCCTCTTGCTCTG
LOC_Os02g12600
OsAffx.12008.1.S1_x_at--742--1351Chr02:6586320..6586344 (25 bp)
AGAGAGACTTGACCATTTGCTCCCT
LOC_Os02g12600
OsAffx.12008.1.S1_x_at--585--951Chr02:6586601..6586625 (25 bp)
AGGAAAGCGCTCTCACATGCTCTGT
LOC_Os02g12600
OsAffx.12008.1.S1_x_at--221--8731Chr02:6586623..6586738 (25 bp)
TGTCATTCCCCTCTGTGGAGAGAGT
LOC_Os02g12600
OsAffx.12008.1.S1_x_at--815--6011Chr02:6586731..6586755 (25 bp)
GAGAGAGTGGTCTACAGCACCTGCT
LOC_Os02g12600
OsAffx.12008.1.S1_x_at--769--7791Chr02:6586860..6586884 (25 bp)
GGTCTCCCCGTCTTTGAAGGATGTA
LOC_Os02g12600
Target Sequence 
GCAGTTGCATTATGCCCTGAGCCAGGCTGGAAGGTTATTGATGCATGTGCGGCTCCAGGGAATAAAACAGTCCATCTTGC
TGCACTCATGAATGGAGAGGGGAATATTGAAACAATCAATGGTGACTTTTTGGATATCGATAGCAATGATCCATCATATG
CCGAGGTCCGAGCTATTCTATTAGATCCCTCTTGCTCTGGTTCCGGAATCTCTACAGAGAGACTTGACCATTTGCTCCCT
TCGCACTCAAGAGGTAATCAGGATGATGCAAGTACGAGTTCAAGGATAAGGAAACTCTCCGCCTTCCAGAGGAAAGCGCT
CTCACATGCTCTGTCATTCCCCTCTGTGGAGAGAGTGGTCTACAGCACCTGCTCAATCCACCAAGCTGAGAACGAGGACG
TCGTGAGCTCCGTCCTGCCATTGGCGTCATCGCTCGGATTCGAGCTCGCTACTCCATTCCCTCAATGGCGACGCCGTGGT
CTCCCCGTCTTTGAAGGATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12008.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis