Browse Element(s) Details


OsAffx.12051.1.S1_at

Description tigr:9630.m01428
TID=OsAffx.12051.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g152609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15230Os.7804.1.S1_at11/112+8501518..8504975GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g15240OsAffx.13097.1.S1_s_at11/112+8508503..8515678hypothetical protein
LOC_Os02g15240Os.46613.1.S2_at4/112+8508503..8515678hypothetical protein
LOC_Os02g15250OsAffx.12050.1.S1_at11/112+8516794..8518231Late embryogenesis abundant protein, expressed
LOC_Os02g15260OsAffx.12051.1.S1_s_at11/112+8525127..8531124hypothetical protein
LOC_Os02g15260Os.52126.1.S1_at10/112+8525127..8531124hypothetical protein
LOC_Os02g15260OsAffx.12051.1.S1_at9/112+8525127..8531124hypothetical protein
LOC_Os02g15270Os.54097.1.A1_at11/112+8536373..8538482Tyrosine-protein phosphatase YVH1, putative, expressed
LOC_Os02g15270Os.34341.1.S1_at1/112+8536373..8538482Tyrosine-protein phosphatase YVH1, putative, expressed
LOC_Os02g15280OsAffx.12052.1.S1_at11/112+8539272..8539622VQ motif family protein
LOC_Os02g15290Os.56119.1.S1_at11/112+8541337..8542124VQ motif family protein, expressed
LOC_Os02g15300NANA2+8543244..8543504hypothetical protein
LOC_Os02g15310Os.25625.1.S1_at10/112+8553872..8558161RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12051.1.S1_at--488--7671Chr02:8525821..8525845 (25 bp)
GGGTTGGTGTTATACATGATGCTGC
LOC_Os02g15260
OsAffx.12051.1.S1_at--778--711Chr02:8525836..8525860 (25 bp)
ATGATGCTGCACTTGTTACCATGAC
LOC_Os02g15260
OsAffx.12051.1.S1_at--150--6351Chr02:8525838..8525862 (25 bp)
GATGCTGCACTTGTTACCATGACTA
LOC_Os02g15260
OsAffx.12051.1.S1_at--1077--4751Chr02:8525841..8525865 (25 bp)
GCTGCACTTGTTACCATGACTAAAG
LOC_Os02g15260
OsAffx.12051.1.S1_at--123--4311NONE
CCATGACTAAAGTGGAAGGCTTACA
NONE
OsAffx.12051.1.S1_at--292--1251Chr02:8530431..8530455 (25 bp)
AGAACTTTTTGGCACTTCGTAGAAT
LOC_Os02g15260
OsAffx.12051.1.S1_at--418--3671Chr02:8530435..8530459 (25 bp)
CTTTTTGGCACTTCGTAGAATTACT
LOC_Os02g15260
OsAffx.12051.1.S1_at--1019--10831Chr02:8530439..8530463 (25 bp)
TTGGCACTTCGTAGAATTACTAAAT
LOC_Os02g15260
OsAffx.12051.1.S1_at--167--131Chr02:8530454..8530478 (25 bp)
ATTACTAAATGCGACTTCTGATGGT
LOC_Os02g15260
OsAffx.12051.1.S1_at--1093--2011Chr02:8530457..8530478 (22 bp)
ACTAAATGCGACTTCTGATGGTGAG
LOC_Os02g15260
OsAffx.12051.1.S1_at--670--611NONE
ATGCGACTTCTGATGGTGAGATAAG
NONE
Target Sequence 
GGGTTGGTGTTATACATGATGCTGCACTTGTTACCATGACTAAAGTGGAAGGCTTACATTCAAGCCAAAAATGTTACCAT
CTAGCATCAAAACACAACTGCCATCTCTTTGGTGGAACACTCTTGATGTGGCTCTTCAGGGTAATTAGATGCTTTAATAC
CAAGAGTGATATGTATGCGATTTTTTATGCTGGTGATGCTAATGGTGTGATGGAAGGTGAGATAAGACCACAGAGCCAGT
CATCGCTATGTCTGAAAGCATATAGACTATTTCCCAGCTGTTTACACCCCGGCAAAACAATGTTCAATCTTATAAGTTTA
GTTTCAGTGAAACTGTTTCCTTTGAGCATGCATCCAATTAGCATACATGTAACATTTGGTAAAAGAACTTTTTGGCACTT
CGTAGAATTACTAAATGCGACTTCTGATGGTGAGATAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12051.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis