Browse Element(s) Details


OsAffx.1206.1.S1_x_at

Description gb:NM_189040.1
DB_XREF= gi:34905163
GEN=P0700D12.27
TID=OsAffx.1206.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0700D12.27 (P0700D12.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g118402/11trehalose-phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11800Os.15957.1.S1_at11/116+6249719..6252708Annexin-like protein RJ4, putative, expressed
LOC_Os06g11810Os.55513.1.S1_at11/116+6252708..6253495dehydration stress-induced protein, putative, expressed
LOC_Os06g11820OsAffx.29576.4.S1_x_at11/116+6254756..6255753hypothetical protein
LOC_Os06g11830Os.20614.3.S1_x_at11/116+6257433..6260360hAT family dimerisation domain containing protein, expressed
LOC_Os06g11840OsAffx.4803.1.S1_at10/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.1206.1.S1_x_at2/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.9230.2.S1_at1/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.9230.2.S1_x_at1/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11850OsAffx.27573.1.S1_at11/116+6294653..6298081hypothetical protein
LOC_Os06g11860OsAffx.10845.1.S1_s_at11/116+6303590..6305635AP2 domain containing protein, expressed
LOC_Os06g11860OsAffx.10845.2.S1_s_at11/116+6303590..6305635AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0004805molecular_functiontrehalose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1206.1.S1_x_at--185--9412Chr08:25600489..25600513 (25 bp)
TCGTCAACGCCGTCAACTCGCATGA
NONE
OsAffx.1206.1.S1_x_at--653--9712Chr08:25600501..25600525 (25 bp)
TCAACTCGCATGACTTCGCAGCGCA
NONE
OsAffx.1206.1.S1_x_at--1023--4851Chr08:25600553..25600577 (25 bp)
GCTAGCTGGTCCAGCACGATGCCCA
NONE
OsAffx.1206.1.S1_x_at--36--1891Chr08:25600568..25600592 (25 bp)
ACGATGCCCAGCCTCGGGCTTCATG
NONE
OsAffx.1206.1.S1_x_at--518--7591Chr08:25600583..25600607 (25 bp)
GGGCTTCATGGAGCTCCTCATGCCG
NONE
OsAffx.1206.1.S1_x_at--1020--591Chr08:25600602..25600626 (25 bp)
ATGCCGGCGCTACATGTGATTGGAT
NONE
OsAffx.1206.1.S1_x_at--591--3511Chr08:25600614..25600638 (25 bp)
CATGTGATTGGATGCGTGCTCGCCG
NONE
OsAffx.1206.1.S1_x_at--1090--11Chr08:25600620..25600644 (25 bp)
ATTGGATGCGTGCTCGCCGTCTTAG
NONE
OsAffx.1206.1.S1_x_at--1077--10414Chr08:25600641..25600665 (25 bp)
TTAGATCGCCTGCATGCCTGCCTAG
NONE
OsAffx.1206.1.S1_x_at--160--9873Chr08:25600680..25600704 (25 bp)
TACACCTTTCGATTGCATCTCCATG
NONE
OsAffx.1206.1.S1_x_at--726--4971Chr08:25600694..25600718 (25 bp)
GCATCTCCATGTACACGTGCCAGTG
NONE
Target Sequence 
TCGTCAACGCCGTCAACTCGCATGACTTCGCAGCGCACCTCGCCGGCGTGGACTGCCGCATGGGGCTAGCTGGTCCAGCA
CGATGCCCAGCCTCGGGCTTCATGGAGCTCCTCATGCCGGCGCTACATGTGATTGGATGCGTGCTCGCCGTCTTAGATCG
CCTGCATGCCTGCCTAGTGTCGCCCTCTCGCTACACCTTTCGATTGCATCTCCATGTACACGTGCCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1206.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis