Browse Element(s) Details


OsAffx.12083.1.S1_at

Description tigr:9630.m01609
TID=OsAffx.12083.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1721011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17190Os.48621.1.S1_at11/112+9848226..9852381Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g17200OsAffx.12082.1.S1_at11/112+9853307..9854419hypothetical protein
LOC_Os02g17210OsAffx.12083.1.S1_at11/112+9867022..9868131F-box domain containing protein
LOC_Os02g17220OsAffx.12084.1.S1_at11/112+9871117..9871782transposon protein, putative, unclassified
LOC_Os02g17230OsAffx.24289.1.S1_at10/112+9877603..9879274flavin-containing monooxygenase, putative
LOC_Os02g17230OsAffx.30914.1.S1_x_at1/112+9877603..9879274flavin-containing monooxygenase, putative
LOC_Os02g17240Os.8089.1.S1_at11/112+9885607..9888391pollen-specific kinase partner protein, putative, expressed
LOC_Os02g17250Os.18074.1.A1_at11/112+9888628..9893606expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12083.1.S1_at--473--4431Chr02:9867546..9867570 (25 bp)
GCCATCCTGTCGAGGCTCGAGGATG
LOC_Os02g17210
OsAffx.12083.1.S1_at--708--6351Chr02:9867340..9867364 (25 bp)
GATCCATCGACCTATACCTATTAAT
LOC_Os02g17210
OsAffx.12083.1.S1_at--1027--10491Chr02:9867320..9867344 (25 bp)
TTAATATCGGACCTCATGCAGCCAC
LOC_Os02g17210
OsAffx.12083.1.S1_at--818--651Chr02:9867305..9867329 (25 bp)
ATGCAGCCACGGTGAACCTCGCATG
LOC_Os02g17210
OsAffx.12083.1.S1_at--927--1751Chr02:9867290..9867314 (25 bp)
ACCTCGCATGGCTGCTCGATTTGGA
LOC_Os02g17210
OsAffx.12083.1.S1_at--444--4691Chr02:9867264..9867288 (25 bp)
GCGGCAATTGTTGAAATGTGGCACA
LOC_Os02g17210
OsAffx.12083.1.S1_at--324--2231Chr02:9867242..9867266 (25 bp)
ACAATGATCATGTTCCAGTTCCACC
LOC_Os02g17210
OsAffx.12083.1.S1_at--950--5951Chr02:9867122..9867146 (25 bp)
GAGCAATGCCGAGGGACTTCAGCCA
LOC_Os02g17210
OsAffx.12083.1.S1_at--712--1071Chr02:9867111..9867135 (25 bp)
AGGGACTTCAGCCATGGCCGTGCAC
LOC_Os02g17210
OsAffx.12083.1.S1_at--480--4491Chr02:9867095..9867119 (25 bp)
GCCGTGCACTGGTTCATGGTGGACA
LOC_Os02g17210
OsAffx.12083.1.S1_at--297--7531Chr02:9867077..9867101 (25 bp)
GTGGACACAATAACCAGCGGCGTGG
LOC_Os02g17210
Target Sequence 
GCCATCCTGTCGAGGCTCGAGGATGGCGAGGACCTCATGGTGGTGGAGTGCACCTGCACCGCGCTCCGGCGCCTCGTCGC
CGAGCTCGACGCCGTGCTCTGGAAGCCCATGTACGAGGACGTGGTAGACGCGCGGCGGTTCGCCGGAGTCGTCCGCGCCG
ACGACGAATCGCCGGAGATGAGCTGGAAGGAGAGGTTCACGGCGGCGATCCATCGACCTATACCTATTAATATCGGACCT
CATGCAGCCACGGTGAACCTCGCATGGCTGCTCGATTTGGAGGCGGCAATTGTTGAAATGTGGCACAATGATCATGTTCC
AGTTCCACCTCAACATCCAGTCGTCCCTCTCTCCGACGACGACCGCTCCGACTCGCCGGAGCTGCCGCCGGAGAGTGTCC
CTCGTCGGAGGAGGAGGCAGTGGAGAGCAATGCCGAGGGACTTCAGCCATGGCCGTGCACTGGTTCATGGTGGACACAAT
AACCAGCGGCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis