Browse Element(s) Details


OsAffx.12123.1.S1_at

Description tigr:9630.m01900
TID=OsAffx.12123.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1988011/11Cell differentiation protein rcd1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19860Os.50899.1.S1_at11/112+11668355..11673576Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed
LOC_Os02g19870NANA2+11674414..11684362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g19880OsAffx.12123.1.S1_at11/112+11693449..11699182Cell differentiation protein rcd1, putative, expressed
LOC_Os02g19890Os.54012.1.S1_x_at11/112+11701991..11708366NB-ARC domain containing protein, expressed
LOC_Os02g19890Os.25071.1.A1_at9/112+11701991..11708366NB-ARC domain containing protein, expressed
LOC_Os02g19900NANA2+11709902..11710459hypothetical protein
LOC_Os02g19924OsAffx.24336.1.S1_at11/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.24336.1.S1_x_at11/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12124.1.S1_at10/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12125.1.S1_x_at6/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924Os.52238.1.S1_at3/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12125.3.S1_x_at2/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924Os.49936.2.A1_at2/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.15708.1.S1_at1/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12123.1.S1_at--238--9311Chr02:11695370..11695394 (25 bp)
TCCCGAGACTAGGAGCCATTTCTTA
LOC_Os02g19880
OsAffx.12123.1.S1_at--643--2351Chr02:11695639..11695661 (23 bp)
AAAGCTCATATTCCATTGTACCTAT
LOC_Os02g19880
OsAffx.12123.1.S1_at--567--4311Chr02:11695694..11695718 (25 bp)
CCTTTTGAATACTTGCGGCTGACCA
LOC_Os02g19880
OsAffx.12123.1.S1_at--828--8351Chr02:11697802..11697826 (25 bp)
GGCGGTAGGCAGTGAGCTTTCAAAA
LOC_Os02g19880
OsAffx.12123.1.S1_at--376--6591Chr02:11698282..11698306 (25 bp)
GATTGTCTTGGATGACGCTGGGCTT
LOC_Os02g19880
OsAffx.12123.1.S1_at--1025--3891Chr02:11698299..11698323 (25 bp)
CTGGGCTTGGTTACATTTGCGCTAC
LOC_Os02g19880
OsAffx.12123.1.S1_at--1117--191Chr02:11698313..11698337 (25 bp)
ATTTGCGCTACTGCTGATCGGTTCT
LOC_Os02g19880
OsAffx.12123.1.S1_at--58--7391Chr02:11698367..11698391 (25 bp)
GTGACCTCAATGGATGACAAGCCCT
LOC_Os02g19880
OsAffx.12123.1.S1_at--843--6651Chr02:11698402..11698426 (25 bp)
GTTGAAGCACATTATCCACTGTTAC
LOC_Os02g19880
OsAffx.12123.1.S1_at--158--9191Chr02:11698571..11698595 (25 bp)
TGCCTTCCTACCACACTTATAGATG
LOC_Os02g19880
OsAffx.12123.1.S1_at--819--2911Chr02:11698835..11698858 (24 bp)
AAGGATGACCCTACAATGCAGCAAT
LOC_Os02g19880
Target Sequence 
TCCCGAGACTAGGAGCCATTTCTTAAAAGCTCATATTCCATTGTACCTATGTTCATTTTTGGAAAATACCAGCAAGACCA
GACCTTTTGAATACTTGCGGCTGACCAGCTTGGGTGTCATTGGTGCTCTTGTGAAGGCTGAAGGTACAGAAGTCATCAAT
TTTCTACTGCAATATGAATTTGTTCCTCTCTGCCTGCATGCCATGGCGGTAGGCAGTGAGCTTTCAAAAACTGTGGCAAC
TTTTATTATTGAAAAGATTGTCTTGGATGACGCTGGGCTTGGTTACATTTGCGCTACTGCTGATCGGTTCTTCGCTGTGG
GGACTGCCTTAGCAGGCATGGTGACCTCAATGGATGACAAGCCCTCCCCAAGGTTGTTGAAGCACATTATCCACTGTTAC
CTTAGGATCACAGACAATCCTAGGGGCTTGGAGGCACTGCAGACTTGCCTTCCTACCACACTTATAGATGGGACATTCAA
CAATCTTACTAAGGATGACCCTACAATGCAGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis