Browse Element(s) Details


OsAffx.12136.1.S1_at

Description tigr:9630.m01965
TID=OsAffx.12136.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2053011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20490Os.51211.1.S1_at11/112+12086013..12089345expressed protein
LOC_Os02g20500OsAffx.2696.1.S1_x_at11/112+12089710..12091108hypothetical protein
LOC_Os02g20500OsAffx.2696.1.S1_at11/112+12089710..12091108hypothetical protein
LOC_Os02g20510OsAffx.2697.1.S1_at11/112+12100867..12101382hypothetical protein
LOC_Os02g20520OsAffx.12135.1.S1_x_at8/112+12103228..12105794hypothetical protein
LOC_Os02g20520OsAffx.12135.1.S1_at8/112+12103228..12105794hypothetical protein
LOC_Os02g20530OsAffx.12136.1.S1_at11/112+12106516..12110223hypothetical protein
LOC_Os02g20540Os.14430.1.S1_at11/112+12113917..12114962Fasciclin domain containing protein, expressed
LOC_Os02g20550OsAffx.2698.1.S1_at11/112+12123596..12123874hypothetical protein
LOC_Os02g20560Os.17961.1.S1_a_at11/112+12127922..12129229Fasciclin domain containing protein, expressed
LOC_Os02g20570Os.46785.2.S1_x_at4/112+12134248..12138246retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20570OsAffx.30226.2.S1_x_at2/112+12134248..12138246retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20570OsAffx.442.1.S1_x_at1/112+12134248..12138246retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12136.1.S1_at--960--9011Chr02:12109244..12109268 (25 bp)
TGCAAACAGTCGTCCAGCAGCGAAA
LOC_Os02g20530
OsAffx.12136.1.S1_at--300--9611Chr02:12109293..12109317 (25 bp)
TCATCTCAAGTGACCCAGCAAGCTG
LOC_Os02g20530
OsAffx.12136.1.S1_at--121--3251Chr02:12109311..12109335 (25 bp)
CAAGCTGGAGGTAGCTCTGCTGCTA
LOC_Os02g20530
OsAffx.12136.1.S1_at--605--9911Chr02:12109334..12109358 (25 bp)
TACTGCTACCATGTACCCGAGCATG
LOC_Os02g20530
OsAffx.12136.1.S1_at--566--5291Chr02:12109399..12109423 (25 bp)
GAATGGCTCCACACGAGGTGATACA
LOC_Os02g20530
OsAffx.12136.1.S1_at--994--7751Chr02:12109415..12109439 (25 bp)
GGTGATACAGTATCTGCGCGCCACA
LOC_Os02g20530
OsAffx.12136.1.S1_at--659--2691Chr02:12109507..12109531 (25 bp)
AAGCTCTAATAACCTTCTCGGTGGA
LOC_Os02g20530
OsAffx.12136.1.S1_at--246--7651Chr02:12109942..12109966 (25 bp)
GGGAGGATCATCAACAAACCGGTCA
LOC_Os02g20530
OsAffx.12136.1.S1_at--895--2431Chr02:12109954..12109978 (25 bp)
AACAAACCGGTCACTGCAATGTCAA
LOC_Os02g20530
OsAffx.12136.1.S1_at--139--5511Chr02:12110115..12110139 (25 bp)
GAAAAACGTTGGTGGATCTTCTGGC
LOC_Os02g20530
OsAffx.12136.1.S1_at--138--5511Chr02:12110148..12110172 (25 bp)
GAAAACCGTTGGTGGATCTTCTGGC
LOC_Os02g20530
Target Sequence 
TGCAAACAGTCGTCCAGCAGCGAAAAGGGCAGACGTGAAGATACTGGAATCATCTCAAGTGACCCAGCAAGCTGGAGGTA
GCTCTGCTGCTACTGCTACCATGTACCCGAGCATGGTAGACAGGAAGAGGAAGAGGGCGCAGGCGACGCCATCAAGAATG
GCTCCACACGAGGTGATACAGTATCTGCGCGCCACAGCGGTGGAAACTGACAAGGAACTGGAGACTCTGAACAATTTCTT
CAAGGTTTGTGATGGGGAAGACAAAGCTCTAATAACCTTCTCGGTGGAGCAGATAAGAAGTATAAAGAAGAAGATAGGGA
GGATCATCAACAAACCGGTCACTGCAATGTCAAGTAGGCGGATGGCGAGATTTATTGATGAAATTGATACTATCAAAGAA
GAGAAGGCAAGAGTGTTTGAAGAAATTATAAAAATCTTGAAAAATCCTAGGAGGAAGAGAGAGAATGATGGATCTTCTGG
CAGCAATAGGAAAAACGTTGGTGGATCTTCTGGCGGCAAAAAGAAAACCGTTGGTGGATCTTCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis