Browse Element(s) Details


OsAffx.12210.1.S1_at

Description tigr:9630.m02524
TID=OsAffx.12210.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g267307/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26700Os.10784.1.S1_at10/112+15670356..15673681ChaC-like protein, expressed
LOC_Os02g26700Os.39083.1.A1_x_at1/112+15670356..15673681ChaC-like protein, expressed
LOC_Os02g26710OsAffx.24439.1.S1_at11/112+15684765..15685157cyclo-DOPA 5-O-glucosyltransferase, putative
LOC_Os02g26720Os.53176.1.S1_at11/112+15691973..15693281Inositol 1, 3, 4-trisphosphate 5/6-kinase family protein, expressed
LOC_Os02g26730OsAffx.12210.1.S1_at7/112+15698435..15698638hypothetical protein
LOC_Os02g26740Os.25411.1.A1_at2/112+15700031..15704838transposon protein, putative, Pong sub-class, expressed
LOC_Os02g26750NANA2+15705574..15706932transposon protein, putative, Pong sub-class
LOC_Os02g26760OsAffx.12211.1.S1_at11/112+15708966..15710565hypothetical protein
LOC_Os02g26770Os.11417.1.S1_at4/112+15711180..15712900Trans-cinnamate 4-monooxygenase, putative
LOC_Os02g26780OsAffx.2764.1.S1_at11/112+15717313..15719377transposon protein, putative, unclassified
LOC_Os02g26790Os.51784.1.S1_at11/112+15719957..15721664expressed protein
LOC_Os02g26790OsAffx.24440.1.S1_s_at11/112+15719957..15721664expressed protein
LOC_Os02g26790Os.9574.1.S1_at11/112+15719957..15721664expressed protein
LOC_Os02g26800NANA2+15723235..15726667expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12210.1.S1_at--233--7611Chr02:15698517..15698540 (24 bp)
GGGAAGTCAACATTGACTACAATGA
LOC_Os02g26730
OsAffx.12210.1.S1_at--74--3611NONE
CATTGACTACAATGATACCAGGTCT
NONE
OsAffx.12210.1.S1_at--1024--31NONE
ATTGACTACAATGATACCAGGTCTT
NONE
OsAffx.12210.1.S1_at--377--10751Chr02:15698529..15698601 (25 bp)
TTGACTACAATGATACCAGGTCTTC
LOC_Os02g26730
OsAffx.12210.1.S1_at--478--8951Chr02:15698530..15698602 (25 bp)
TGACTACAATGATACCAGGTCTTCA
LOC_Os02g26730
OsAffx.12210.1.S1_at--447--5711Chr02:15698531..15698603 (25 bp)
GACTACAATGATACCAGGTCTTCAG
LOC_Os02g26730
OsAffx.12210.1.S1_at--942--2011Chr02:15698532..15698604 (25 bp)
ACTACAATGATACCAGGTCTTCAGC
LOC_Os02g26730
OsAffx.12210.1.S1_at--709--3731Chr02:15698290..15698605 (25 bp)
CTACAATGATACCAGGTCTTCAGCT
NONE
OsAffx.12210.1.S1_at--61--9851Chr02:15698291..15698606 (25 bp)
TACAATGATACCAGGTCTTCAGCTA
NONE
OsAffx.12210.1.S1_at--600--2232Chr02:15698588..15698607 (20 bp)
ACAATGATACCAGGTCTTCAGCTAA
LOC_Os02g26730
OsAffx.12210.1.S1_at--89--3192Chr02:15698588..15698608 (21 bp)
CAATGATACCAGGTCTTCAGCTAAC
LOC_Os02g26730
Target Sequence 
GGGAAGTCAACATTGACTACAATGATACCAGGTCTTCAGCTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis