Browse Element(s) Details


OsAffx.12213.1.S1_at

Description tigr:9630.m02536
TID=OsAffx.12213.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2684011/11MBOAT family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26810Os.11417.1.S1_at11/112+15728958..15730985Trans-cinnamate 4-monooxygenase, putative, expressed
LOC_Os02g26820OsAffx.12212.1.S1_at11/112+15741979..15742407hypothetical protein
LOC_Os02g26820Os.40855.5.S1_x_at6/112+15741979..15742407hypothetical protein
LOC_Os02g26830NANA2+15743509..15744081hypothetical protein
LOC_Os02g26840OsAffx.12213.1.S1_at11/112+15753641..15754681MBOAT family protein
LOC_Os02g26850Os.13799.1.S1_at11/112+15756235..15759910conserved eukaryotic protein; DUF652; involved in RNA processing and modification, putative, expressed
LOC_Os02g26860Os.13474.1.S1_at11/112+15764571..15769479membrane related protein, putative, expressed
LOC_Os02g26870NANA2+15774586..15777808retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26880NANA2+15778673..15780610retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12213.1.S1_at--622--6031Chr02:15754088..15754112 (25 bp)
GAGATGCACCGCTACGCGGCGTTCT
LOC_Os02g26840
OsAffx.12213.1.S1_at--575--3251Chr02:15754117..15754141 (25 bp)
CAACGCCGTCTTCATGTACTGCTTC
LOC_Os02g26840
OsAffx.12213.1.S1_at--253--7151Chr02:15754124..15754148 (25 bp)
GTCTTCATGTACTGCTTCCTCGACG
LOC_Os02g26840
OsAffx.12213.1.S1_at--609--7691Chr02:15754257..15754281 (25 bp)
GGTGGAACCTCGTGGCGTCGGCGGT
LOC_Os02g26840
OsAffx.12213.1.S1_at--102--3871Chr02:15754367..15754391 (25 bp)
CTGATGCACGAGGTGGTGATACTCT
LOC_Os02g26840
OsAffx.12213.1.S1_at--666--1051Chr02:15754377..15754401 (25 bp)
AGGTGGTGATACTCTACCTGACCTC
LOC_Os02g26840
OsAffx.12213.1.S1_at--251--4131Chr02:15754533..15754557 (25 bp)
CGCTCGTACTGGGTTTCGTCGCCGG
LOC_Os02g26840
OsAffx.12213.1.S1_at--490--8231Chr02:15754556..15754580 (25 bp)
GGCACGGCGTTCTGGCTGTTCTTCC
LOC_Os02g26840
OsAffx.12213.1.S1_at--1048--9451Chr02:15754566..15754590 (25 bp)
TCTGGCTGTTCTTCCCGGCGATCTA
LOC_Os02g26840
OsAffx.12213.1.S1_at--566--6971Chr02:15754612..15754636 (25 bp)
GTACCTCGCGGAGATTGCAGGGTTT
LOC_Os02g26840
OsAffx.12213.1.S1_at--951--9031Chr02:15754627..15754651 (25 bp)
TGCAGGGTTTGCAAAAGGCCTCGGC
LOC_Os02g26840
Target Sequence 
GAGATGCACCGCTACGCGGCGTTCTCCCTCAACGCCGTCTTCATGTACTGCTTCCTCGACGTCGTCCTGCCGGCCCTCGG
CGCGGCGGGCGTGGCGCTGGGCATGGAGATGGAGCCGCAGTTCGACCGGCCGTACCTGTCGGCCTCGCTGCGGGACTTCT
GGGGCCGGCGGTGGAACCTCGTGGCGTCGGCGGTGCTCCGCGCCGCCGTCTACGACCCCGTCAGGGCGCGCTCCGGCGAC
CCGGCGGCCGGCGTGCTCGCCGCGTTCCTCGTGTCGGGGCTGATGCACGAGGTGGTGATACTCTACCTGACCTCCCGGGC
TCCCACGGGGCGCGTCACGGCGTTCTTCGCGCTCCACGGCGTGTGCGTCTGCGCCGAGCGGTGGTGGTGCGCGCGCCAGC
ACAAGCGCGAGGCGAGGCCGCAGCTGCCTCGCGCGGTGGCCGCGCCGCTCGTACTGGGTTTCGTCGCCGGCACGGCGTTC
TGGCTGTTCTTCCCGGCGATCTACGGCGGCGGGATGGACGACCTGTACCTCGCGGAGATTGCAGGGTTTGCAAAAGGCCT
CGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis