Browse Element(s) Details


OsAffx.12241.1.S1_at

Description tigr:9630.m02661
TID=OsAffx.12241.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2797011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27950Os.51622.1.S1_at11/112+16531344..16539876Ataxin-2 N-terminal region family protein, expressed
LOC_Os02g27950Os.7302.1.S1_at10/112+16531344..16539876Ataxin-2 N-terminal region family protein, expressed
LOC_Os02g27960Os.10048.1.S1_at10/112+16544381..16547049expressed protein
LOC_Os02g27970OsAffx.12241.1.S1_at11/112+16556012..16556304hypothetical protein
LOC_Os02g27980NANA2+16562510..16562972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g27990NANA2+16569131..16569331hypothetical protein
LOC_Os02g28000NANA2+16574486..16575182retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g28010OsAffx.22947.2.S1_x_at8/112+16577545..16583727retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28010OsAffx.22947.3.S1_x_at4/112+16577545..16583727retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28010OsAffx.22947.1.S1_x_at4/112+16577545..16583727retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28010OsAffx.22947.5.S1_x_at2/112+16577545..16583727retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12241.1.S1_at--851--3251Chr02:16556050..16556070 (21 bp)
CAACGAGTTCGAGCTAGGAGGCGAT
LOC_Os02g27970
OsAffx.12241.1.S1_at--120--911Chr02:16556100..16556124 (25 bp)
AGGCGATGCTCGCAACCATCACGGT
LOC_Os02g27970
OsAffx.12241.1.S1_at--1155--2631Chr02:16556113..16556137 (25 bp)
AACCATCACGGTCGCATGCGTGTTG
LOC_Os02g27970
OsAffx.12241.1.S1_at--291--3971Chr02:16556121..16556145 (25 bp)
CGGTCGCATGCGTGTTGAGGATCTA
LOC_Os02g27970
OsAffx.12241.1.S1_at--1082--10011Chr02:16556144..16556168 (25 bp)
TAGCAGTGGCGCTCCGAATCAAGGA
LOC_Os02g27970
OsAffx.12241.1.S1_at--209--4573Chr04:14280100..14280122 (23 bp)
GCGCTCCGAATCAAGGATGGCAACA
NONE
OsAffx.12241.1.S1_at--420--2931Chr02:16556179..16556203 (25 bp)
AAGGAATGGTGTCCTTCCACCTCTA
LOC_Os02g27970
OsAffx.12241.1.S1_at--993--9211Chr02:16556194..16556218 (25 bp)
TCCACCTCTAAGGAAGATAGCCATA
LOC_Os02g27970
OsAffx.12241.1.S1_at--594--1691Chr02:16556212..16556236 (25 bp)
AGCCATATCATCTTTGTGCTTGCCT
LOC_Os02g27970
OsAffx.12241.1.S1_at--267--8731Chr02:16556237..16556261 (25 bp)
TGTCTCTTTTCCCTTGTCCTCATGG
LOC_Os02g27970
OsAffx.12241.1.S1_at--448--10811Chr02:16556250..16556274 (25 bp)
TTGTCCTCATGGCTCTTATCGGCAT
LOC_Os02g27970
Target Sequence 
CAACGAGTTCGAGCTAGGAGGCGATGCTCGCAACCATCACGGTCGCATGCGTGTTGAGGATCTAGCAGTGGCGCTCCGAA
TCAAGGATGGCAACAAGAAGGAATGGTGTCCTTCCACCTCTAAGGAAGATAGCCATATCATCTTTGTGCTTGCCTTGTCT
CTTTTCCCTTGTCCTCATGGCTCTTATCGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis